View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19947_high_8 (Length: 412)
Name: NF19947_high_8
Description: NF19947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19947_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 35685532 - 35685136
Alignment:
| Q |
1 |
actggaacaccaataatcatataaatattgtgaaaatgaatattaaaagggtcaacaatttttctctctgtcaatggacaaaaagtttttatcacaatat |
100 |
Q |
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| T |
35685532 |
actggaacaccaataatcatataaatattgtgaaaatgaatattaaaagggtcaacaatttttctctctgtcaatggacaaaaagtttttatcacaatat |
35685433 |
T |
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| Q |
101 |
tgacaatataaatgaaacgtcttagttccgacttcaaaattttgtataatgcaaagaggttagggttagaagataggaataatatattgcnnnnnnngcg |
200 |
Q |
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| T |
35685432 |
tgacaatataaatgaaacgtcttagttccgacttcaaaattttgtataatgcaaagaggttagggttagaagataggaataatatgttgcaaaaaaagtg |
35685333 |
T |
|
| Q |
201 |
gtgtgcacatactataaatcatcataaaaattgcaactctctctgtcaagaagcaccagcaggacaaaaaggaaaatcattccaagaggggggaccatat |
300 |
Q |
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| T |
35685332 |
gtatgcacatactataaatcatcataaaaattgcaactctctctgtcaagaagcaccagcaggacaaaaaggaaaatcattccaagaggggggaccatat |
35685233 |
T |
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| Q |
301 |
attaataccattatgtgcacattagacaaaaatctagatccaaatttcttataccgcgtcatgcaaaacaagccaacttacattaggatgcaatctg |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35685232 |
attaataccattatgtgcacattagacaaaaatctagatccaaatttcttataccgcgtcatgcaaaacaagccaacttacattaggatgcaatctg |
35685136 |
T |
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