View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19947_low_1 (Length: 606)

Name: NF19947_low_1
Description: NF19947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19947_low_1
NF19947_low_1
[»] chr3 (2 HSPs)
chr3 (36-592)||(26452896-26453464)
chr3 (23-93)||(26452805-26452875)
[»] chr4 (11 HSPs)
chr4 (116-259)||(23676325-23676469)
chr4 (22-114)||(21538922-21539014)
chr4 (23-114)||(4873037-4873128)
chr4 (31-98)||(5979786-5979853)
chr4 (23-98)||(3703584-3703659)
chr4 (57-99)||(12329026-12329068)
chr4 (58-104)||(21538844-21538890)
chr4 (56-98)||(25812263-25812305)
chr4 (72-109)||(2605367-2605404)
chr4 (34-79)||(48292387-48292432)
chr4 (58-99)||(53860895-53860936)
[»] chr1 (7 HSPs)
chr1 (362-419)||(47680531-47680588)
chr1 (31-115)||(49632910-49632995)
chr1 (58-92)||(11985458-11985492)
chr1 (23-114)||(30018564-30018654)
chr1 (449-531)||(47680406-47680488)
chr1 (57-109)||(30018687-30018740)
chr1 (34-114)||(36724171-36724251)
[»] chr8 (2 HSPs)
chr8 (23-114)||(25939281-25939372)
chr8 (57-105)||(9040955-9041003)
[»] scaffold0110 (2 HSPs)
scaffold0110 (23-114)||(11425-11516)
scaffold0110 (23-114)||(19162-19253)
[»] chr7 (5 HSPs)
chr7 (23-93)||(27866682-27866752)
chr7 (65-109)||(36390712-36390756)
chr7 (23-98)||(48073016-48073091)
chr7 (36-88)||(27747373-27747425)
chr7 (61-93)||(39933632-39933664)
[»] chr6 (4 HSPs)
chr6 (36-92)||(30351451-30351507)
chr6 (23-114)||(3806174-3806264)
chr6 (58-105)||(13613749-13613796)
chr6 (31-98)||(16396652-16396719)
[»] chr5 (10 HSPs)
chr5 (57-109)||(10818875-10818927)
chr5 (55-114)||(10818787-10818845)
chr5 (23-114)||(14613533-14613624)
chr5 (50-95)||(4639521-4639566)
chr5 (23-98)||(6706273-6706348)
chr5 (31-114)||(28976687-28976770)
chr5 (58-111)||(4192001-4192054)
chr5 (57-109)||(8367019-8367071)
chr5 (353-381)||(11727230-11727258)
chr5 (58-98)||(35924595-35924635)
[»] chr2 (3 HSPs)
chr2 (27-109)||(13793669-13793751)
chr2 (57-105)||(37096596-37096644)
chr2 (23-93)||(39994519-39994590)


Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 36 - 592
Target Start/End: Original strand, 26452896 - 26453464
Alignment:
Q  36 gtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctcgctttatttttgtcctactgg 135  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||    
T  26452896 gtagttaactattgctggagtatttttggtcattttcatgtgtttctaggaaataatggatgtccaaaaaacaattctcgctttatttttgtcctactgg 26452995  T
Q  136 gctttgtgtgctgttgtctcccatcactgacttaagggtaaatgctcacggaccctgtgaattgttaaaatttcacatggggtgagaaaaacaagcattg 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26452996 gctttgtgtgctgttgtctcccatcactgacttaagggtaaatgctcacggaccccgtgaattgttaaaatttcacatggggtgagaaaaacaagcattg 26453095  T
Q  236 aatcctataatatggtccaactttaaagnnnnnnnnttgtttagcagaagttacgatctgataggctgagcaatggaaaggggtgtgccgatcaatctta 335  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  26453096 aatcctataatatggtccaactttaaagaaaaaaaattgtttagcagaagttacgatctgataggctgaacaatggaaaggggtgtgccgatcaatcttg 26453195  T
Q  336 gagcttctaaagcactggaacaaattttttgttcttagctgctaaattgtgggtccaagtatgccatgtaggatttaacaaccactgaannnnnnnctcc 435  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  26453196 gagcttctaaagcactggaacaaatattttgttcttagctgctaaattgtgggtccaagtatgccatgtaggatttaacaaccactgaatttttttctcc 26453295  T
Q  436 aatgctagaactc------------attttactttatgtaggctcctcatatttcttctctcattttccaatatacctcttctctcactgcttttcttac 523  Q
    |||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26453296 aatgctagaactcaacacacttcctattttactttatgtaggctcctcatatttcttctctcattttccaatatacctcttctctctctgcttttcttac 26453395  T
Q  524 cttttctgtactttttctaatgcagtcagtgctagaacatgttctagtgggagaatttttctccacagg 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26453396 cttttctgtactttttctaatgcagtcagtgctagaacatgttctagtgggagaattgttctccacagg 26453464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 26452875 - 26452805
Alignment:
Q  23 ttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatg 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26452875 ttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatg 26452805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 116 - 259
Target Start/End: Complemental strand, 23676469 - 23676325
Alignment:
Q  116 ctttatttttgtcctactgggctttgtgtgctgttgtctcccatcactgacttaagggtaaatgctcacggaccctgtgaattg-ttaaaatttcacatg 214  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| | |||||||||||||||||||  ||||||| |||||||||||||||    
T  23676469 ctttatttttgtcctactgggatttctgtgctggtgtctcccatcactgacttgacggtaaatgctcacggaccccttgaattgcttaaaatttcacatg 23676370  T
Q  215 gggtgagaaaaacaagcattgaatcctataatatggtccaacttt 259  Q
    | |||||||||||||||||||||||||| ||| | ||||| ||||    
T  23676369 gagtgagaaaaacaagcattgaatcctagaatttagtccaccttt 23676325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 21538922 - 21539014
Alignment:
Q  22 attataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 114  Q
    ||||||||||||||||| |||||||    |||||||||||||||||||| | ||||||||||| ||||| |||| ||  ||||||||||||||    
T  21538922 attataagccagcggtaattaactaccattggggtgtttttggtcatttccttgtgtttctaggaaacattgaaagtttaaaaagcaattctc 21539014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 4873128 - 4873037
Alignment:
Q  23 ttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 114  Q
    ||||||| ||||||||||||||||  ||||  ||||||||| |||||| ||||||||| ||||||| |||| | ||| |||||| |||||||    
T  4873128 ttataagtcagcggtagttaactaccgctgaagtgtttttgatcatttccatgtgtttttagaaaataatggaagtcaaaaaagaaattctc 4873037  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 5979786 - 5979853
Alignment:
Q  31 cagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 98  Q
    ||||||||||||||||  | |||||||||||||||||||| ||| ||||||||  |||||||||||||    
T  5979786 cagcggtagttaactaccgttggggtgtttttggtcatttccatttgtttctaagaaacaatgaatgt 5979853  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 3703659 - 3703584
Alignment:
Q  23 ttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 98  Q
    ||||||| || |||||||||||||  ||||  |  |||||||||||||||||||||||||| ||||||||| ||||    
T  3703659 ttataagtcaacggtagttaactaccgctgatgattttttggtcattttcatgtgtttctaaaaaacaatggatgt 3703584  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 12329026 - 12329068
Alignment:
Q  57 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtc 99  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||    
T  12329026 gtttttgatcattttcatgtgtttctaaaaaacaatggatgtc 12329068  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 21538890 - 21538844
Alignment:
Q  58 tttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaa 104  Q
    |||||||| |||| |||||||||||||||||||||| ||||| ||||    
T  21538890 tttttggttatttccatgtgtttctagaaaacaatggatgtcaaaaa 21538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 25812305 - 25812263
Alignment:
Q  56 tgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 98  Q
    |||||||| |||||| |||||||||||||||||||||| ||||    
T  25812305 tgtttttgatcatttccatgtgtttctagaaaacaatggatgt 25812263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 2605404 - 2605367
Alignment:
Q  72 catgtgtttctagaaaacaatgaatgtccaaaaagcaa 109  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  2605404 catgtgtttctaggaaacaatgaatgtcaaaaaagcaa 2605367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 48292387 - 48292432
Alignment:
Q  34 cggtagttaactattgctggggtgtttttggtcattttcatgtgtt 79  Q
    |||||||||||||  ||||| |||||||||||||||| ||||||||    
T  48292387 cggtagttaactaccgctggagtgtttttggtcatttacatgtgtt 48292432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 53860895 - 53860936
Alignment:
Q  58 tttttggtcattttcatgtgtttctagaaaacaatgaatgtc 99  Q
    ||||||||||||| ||||||||||||| |||||||| |||||    
T  53860895 tttttggtcatttccatgtgtttctaggaaacaatggatgtc 53860936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 47680588 - 47680531
Alignment:
Q  362 ttttgttcttagctgctaaattgtgggtccaagtatgccatgtaggatttaacaacca 419  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  47680588 ttttgttcttagctgctaaatattgggtccaagtatgccatgtaggatttaacaacca 47680531  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 49632910 - 49632995
Alignment:
Q  31 cagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtc-caaaaagcaattctcg 115  Q
    ||||||||||||||||   |  || ||||||||||||||| |||||||||||||||| ||||| |||||  |||||||||||||||    
T  49632910 cagcggtagttaactaccacgaggatgtttttggtcatttccatgtgtttctagaaatcaatggatgtcaaaaaaagcaattctcg 49632995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 92
Target Start/End: Complemental strand, 11985492 - 11985458
Alignment:
Q  58 tttttggtcattttcatgtgtttctagaaaacaat 92  Q
    |||||||||||||||||||||||||||||||||||    
T  11985492 tttttggtcattttcatgtgtttctagaaaacaat 11985458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 30018654 - 30018564
Alignment:
Q  23 ttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 114  Q
    ||||||||  ||| ||||||||||  ||| | ||||||||| ||||||||||| | |||||| ||||||||  ||| |||||||||||||||    
T  30018654 ttataagcacgcgatagttaactaccgcttgagtgtttttgatcattttcatgcgcttctaggaaacaatggttgt-caaaaagcaattctc 30018564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 531
Target Start/End: Complemental strand, 47680488 - 47680406
Alignment:
Q  449 attttactttatgtaggctcctcatatttcttctctcattttccaatatacctcttctctcactgcttttcttaccttttctg 531  Q
    |||||||||||||||||  |||| | |||||||||| ||  |||| ||||||||||||||| |  ||| |||||| |||||||    
T  47680488 attttactttatgtaggaccctcgtgtttcttctcttatcatccattatacctcttctctctccccttctcttactttttctg 47680406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 30018687 - 30018740
Alignment:
Q  57 gtttttggtcattttcatgtg-tttctagaaaacaatgaatgtccaaaaagcaa 109  Q
    |||||||||||||| |||||| ||||||| |||||||| ||||| |||||||||    
T  30018687 gtttttggtcatttccatgtgttttctaggaaacaatggatgtcaaaaaagcaa 30018740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 36724251 - 36724171
Alignment:
Q  34 cggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 114  Q
    |||||||||||||   ||||| ||||||||||||||| |||  | |||||||||||||  |||||  |||||| |||||||    
T  36724251 cggtagttaactaccactgggatgtttttggtcatttccatacgcttctagaaaacaacaaatgtaaaaaaaggaattctc 36724171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 25939372 - 25939281
Alignment:
Q  23 ttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 114  Q
    ||||||||||||||||||||||||  ||| | |||||||||||| ||| ||| ||||||||| ||||||||||| | |||||| ||||||||    
T  25939372 ttataagccagcggtagttaactaccgcttgtgtgtttttggtcttttccatatgtttctaggaaacaatgaatattcaaaaaacaattctc 25939281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 9040955 - 9041003
Alignment:
Q  57 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaa 105  Q
    |||||| ||||||| ||||||||||||| |||||||||||||| |||||    
T  9040955 gtttttagtcatttccatgtgtttctaggaaacaatgaatgtcaaaaaa 9041003  T

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Target: scaffold0110 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 11516 - 11425
Alignment:
Q  23 ttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 114  Q
    ||||||| | || |||||||||||  |||||  ||||||||||||||||||| ||||||||| ||||||| |||||  ||||||||||||||    
T  11516 ttataagtcggcagtagttaactacagctggaatgtttttggtcattttcatatgtttctaggaaacaatcaatgtgaaaaaagcaattctc 11425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 19253 - 19162
Alignment:
Q  23 ttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 114  Q
    ||||||| | || |||||||||||  |||||  ||||||||||||||||||| ||||||||| ||||||| |||||  ||||||||||||||    
T  19253 ttataagtcggcagtagttaactacagctggaatgtttttggtcattttcatatgtttctaggaaacaatcaatgtgaaaaaagcaattctc 19162  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 27866682 - 27866752
Alignment:
Q  23 ttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatg 93  Q
    ||||||| ||||||||||||||||| | | || |||||| |||||||||||| ||||||||| ||||||||    
T  27866682 ttataagtcagcggtagttaactatcgttcggttgttttcggtcattttcatatgtttctaggaaacaatg 27866752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 36390756 - 36390712
Alignment:
Q  65 tcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 109  Q
    |||||||||||||||||||||||||| | |||||| |||||||||    
T  36390756 tcattttcatgtgtttctagaaaacactaaatgtcaaaaaagcaa 36390712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 48073091 - 48073016
Alignment:
Q  23 ttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 98  Q
    |||||||||||   ||||||||||| ||| | || ||||||||||||| ||||||||||||  |||||| ||||||    
T  48073091 ttataagccagtaatagttaactatcgctagagtatttttggtcatttccatgtgtttctaataaacaaagaatgt 48073016  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 27747425 - 27747373
Alignment:
Q  36 gtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaa 88  Q
    |||||||||||  |||| | | ||||| |||||||||||||||||||||||||    
T  27747425 gtagttaactaccgctgagttatttttagtcattttcatgtgtttctagaaaa 27747373  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 39933632 - 39933664
Alignment:
Q  61 ttggtcattttcatgtgtttctagaaaacaatg 93  Q
    |||||||||||||||||||||||||||| ||||    
T  39933632 ttggtcattttcatgtgtttctagaaaataatg 39933664  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 30351507 - 30351451
Alignment:
Q  36 gtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaat 92  Q
    |||||||||||  | |||||||||||||||||||||||| ||||||||| |||||||    
T  30351507 gtagttaactaccgttggggtgtttttggtcattttcatatgtttctaggaaacaat 30351451  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 3806264 - 3806174
Alignment:
Q  23 ttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 114  Q
    ||||||| |||| |||||| | ||||| |||| ||||||||||| |||| ||||||||||||||||| ||| ||||   |||||||||||||    
T  3806264 ttataagtcagctgtagttgattattgttgggatgtttttggtcttttt-atgtgtttctagaaaacgatggatgtgacaaaagcaattctc 3806174  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 13613796 - 13613749
Alignment:
Q  58 tttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaa 105  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||||    
T  13613796 tttttggtcattttcatgtgtttctagaaaacaatagatgtcgaaaaa 13613749  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 16396652 - 16396719
Alignment:
Q  31 cagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 98  Q
    ||||||||||||||||  | |||||||||||| |||||||||| || |||||| ||||||||| ||||    
T  16396652 cagcggtagttaactaccgttggggtgtttttagtcattttcacgtatttctaaaaaacaatggatgt 16396719  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 10818875 - 10818927
Alignment:
Q  57 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 109  Q
    |||||||||||||| ||||||||| |||||||||||| ||||| |||||||||    
T  10818875 gtttttggtcatttccatgtgtttttagaaaacaatggatgtcaaaaaagcaa 10818927  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 10818845 - 10818787
Alignment:
Q  55 gtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 114  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||  ||||||||||||||    
T  10818845 gtgtttttggtaattttaatgtgtttctagaaaacaatg-atgttaaaaaagcaattctc 10818787  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 14613624 - 14613533
Alignment:
Q  23 ttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 114  Q
    |||||||||||| || | ||||||  | ||| ||||||||||| |||||||||||||||||| |||||||| |||    |||||||||||||    
T  14613624 ttataagccagcagtggctaactaccgttggagtgtttttggttattttcatgtgtttctaggaaacaatggatgcgagaaaagcaattctc 14613533  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 4639521 - 4639566
Alignment:
Q  50 ctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaa 95  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||    
T  4639521 ctggggtgtttttgatcattttcatgtgtttctaagaaacaatgaa 4639566  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 6706348 - 6706273
Alignment:
Q  23 ttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 98  Q
    ||||||| || |||||||||||||  ||||   |||||||||| |||||||||||||| ||  |||||||||||||    
T  6706348 ttataagtcaacggtagttaactaccgctgaaatgtttttggttattttcatgtgtttataagaaacaatgaatgt 6706273  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 28976687 - 28976770
Alignment:
Q  31 cagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 114  Q
    ||||||||||||||||| | | |  |||||||| |||||||||||| ||||||  |||||||| ||||   |||||||||||||    
T  28976687 cagcggtagttaactatcgtttgaatgtttttgatcattttcatgtatttctaagaaacaatggatgtgagaaaagcaattctc 28976770  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 4192001 - 4192054
Alignment:
Q  58 tttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaatt 111  Q
    ||||||||||||||||||||||| ||| |||||||| ||||  ||| |||||||    
T  4192001 tttttggtcattttcatgtgtttgtaggaaacaatggatgtgtaaacagcaatt 4192054  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 8367071 - 8367019
Alignment:
Q  57 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 109  Q
    ||||||||||||||  ||| |||||||| |||||||| ||||| |||||||||    
T  8367071 gtttttggtcatttctatgggtttctaggaaacaatggatgtcaaaaaagcaa 8367019  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 353 - 381
Target Start/End: Original strand, 11727230 - 11727258
Alignment:
Q  353 gaacaaattttttgttcttagctgctaaa 381  Q
    |||||||||||||||||||||||||||||    
T  11727230 gaacaaattttttgttcttagctgctaaa 11727258  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 35924635 - 35924595
Alignment:
Q  58 tttttggtcattttcatgtgtttctagaaaacaatgaatgt 98  Q
    ||||||||||||||||||| ||||||||||| |||| ||||    
T  35924635 tttttggtcattttcatgtttttctagaaaataatggatgt 35924595  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 13793751 - 13793669
Alignment:
Q  27 aagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 109  Q
    |||||| | |||||||||||  | ||||||||||||||||||| |||| ||||||||  |||||||| ||||| ||| |||||    
T  13793751 aagccaaccgtagttaactaccgttggggtgtttttggtcattctcatatgtttctaagaaacaatggatgtcaaaacagcaa 13793669  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 37096644 - 37096596
Alignment:
Q  57 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaa 105  Q
    ||||||| |||||| |||||||||||||||||||||||| ||| |||||    
T  37096644 gtttttgatcatttccatgtgtttctagaaaacaatgaaggtcaaaaaa 37096596  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 39994519 - 39994590
Alignment:
Q  23 ttataagccagcggtagttaactattgctggggtgtttttgg-tcattttcatgtgtttctagaaaacaatg 93  Q
    ||||||| || |||||||||||| ||| |||  | ||||||| |||||| ||||||||||||||||||||||    
T  39994519 ttataagtcaacggtagttaactgttgttggaatttttttgggtcatttccatgtgtttctagaaaacaatg 39994590  T

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