View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19947_low_10 (Length: 393)
Name: NF19947_low_10
Description: NF19947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19947_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 372
Target Start/End: Original strand, 33539137 - 33539469
Alignment:
| Q |
20 |
cagatgttttcatgcagatgtaatctgattcgactggtctcaattaatgtgtgtaaatcccttgttttcaaaatgcaaggaatccaagtccacagttcag |
119 |
Q |
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| T |
33539137 |
cagatgttttcatgcagatgtaatctgattcgactggtctcaattaatgtgtgtaaatcccttgttttcaaaatgcaaggaatccaagtccacagttcag |
33539236 |
T |
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| Q |
120 |
tctcctttttcaggccatgtagattaatgtcagcaatcatcgttaataagctaaaagaaattttaccagaaacttgtgattctcttcaaggaaaggagaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33539237 |
tctcctttttcaggccatgtagattaatgtcagcaatcatcgttaataagctaaaagaaattttaccagaaacttgtgattctcttcaaggaaaggagaa |
33539336 |
T |
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| Q |
220 |
aagctagtacaaaattgctcaatgtcagcattgatatcaccacctccctgtatcacctccatgaatttcttcctatcaggagcaagcatcatcgctattc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
33539337 |
aagctagtacaaaattgctcaatgtcagcattgatatcac-------------cacctccatgaatttcttcctatcaggagcaagcatca-------tc |
33539416 |
T |
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| Q |
320 |
gctacctgtaggtaaaatatttatgttacaaaaccatgttaccatatactaca |
372 |
Q |
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| T |
33539417 |
gctacctgtaggtaaaatatttatgttacaaaaccatgttaccatatactaca |
33539469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 372
Target Start/End: Original strand, 33543741 - 33544094
Alignment:
| Q |
20 |
cagatgttttcatgcagatgtaatctgattcgactggtctcaattaatgtgtgtaaatcccttgttttcaaaatgcaaggaatccaa-gtccacagttca |
118 |
Q |
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| T |
33543741 |
cagatgatttcatgcagatgtaatctgattcgactgatctcaattaatgtgtgtaaatcccttgttttcaaaatgcagggaatccaaagtccacagttca |
33543840 |
T |
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| Q |
119 |
gtctcctttttcaggccatgtagattaatgtcagcaatcatcgttaataagctaaaagaaatt---------ttaccagaaacttgtgattctcttcaag |
209 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| | |||||||||||||||||||||||||||| |
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| T |
33543841 |
gtctcctttttcaggccttgtagattaatgtcagcaatcatcattaatacgctaaaagaactaaaacaaaaattaccagaaacttgtgattctcttcaag |
33543940 |
T |
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| Q |
210 |
gaaaggagaaaagctagtacaaaattgctcaatgtcagcattgatatcaccacctccctgtatcacctccatgaatttcttcctatcaggagcaagcatc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33543941 |
gaaaggagaaaagctagtacaaaattgctcaatgtcagcattgatatcaccacctccctgtatcacctccatgaatttcttcctatcaggagcaagcttc |
33544040 |
T |
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| Q |
310 |
atcgctattcgctacctgtaggtaaaatatttatgttacaaaaccatgttaccatatactaca |
372 |
Q |
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| T |
33544041 |
a-------tcgctacctgtaggtaaactatt--tgttacaaaaccatgttaccatatactaca |
33544094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 182 - 311
Target Start/End: Complemental strand, 15582774 - 15582645
Alignment:
| Q |
182 |
ttaccagaaacttgtgattctcttcaaggaaaggagaaaagctagtacaaaattgctcaatgtcagcattgatatcaccacctccctgtatcacctccat |
281 |
Q |
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|||||||||| |||||||||| |||||||| |||||| ||| | |||||||||| ||| |||||||||||||||||||| || |||||||||||| |
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| T |
15582774 |
ttaccagaaatttgtgattctgttcaaggagaggagagaagattgtacaaaatttctctatgtcagcattgatatcaccgttgcctcctatcacctccat |
15582675 |
T |
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| Q |
282 |
gaatttcttcctatcaggagcaagcatcat |
311 |
Q |
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||| |||||||| || ||||||||| |||| |
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| T |
15582674 |
gaacttcttcctgtctggagcaagcttcat |
15582645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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