View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19947_low_11 (Length: 386)
Name: NF19947_low_11
Description: NF19947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19947_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 9 - 368
Target Start/End: Original strand, 7859244 - 7859604
Alignment:
| Q |
9 |
cgaagaatatatcttcccaaaaatgacaaagacattgtgaatccatcttcaatttggagcaaaagataaatcaggacaacaacatcaagttgaaaaagag |
108 |
Q |
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| T |
7859244 |
cgaagaatatatcttcccaaaaatgacaaagacattgtgaatccatcttcaatttggagcaaaagataaatcaggacaacaacatcaagttgaaaaagag |
7859343 |
T |
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| Q |
109 |
aatcaagatcaaaggatcaaacacttttaattgttttaattaaggaaagatattccttcatagtattatgttttcattatgtcattgcaacttgaaattt |
208 |
Q |
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| T |
7859344 |
aatcaagatcaaaggatcaaacacttttaattgttttaattaaggaaagatattccttcatagtattatgttttcattatgtcattgcaacttgaaattt |
7859443 |
T |
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| Q |
209 |
ccatttctgttagttggcatactgtaagcaatatattgaacattgtaatatgttaccatttg-tttttataattaatagaaaaatatgttacgcgaatag |
307 |
Q |
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| T |
7859444 |
ccatttctgttagttggcatactggaagcaatatattgaacattgtaatatgttaccatttgttttttataattaatagtaaaatatgttacgcgaatag |
7859543 |
T |
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| Q |
308 |
tgcatatagttaaattaggtcattcttttgagacgcgggagtaaaatgatgaacaatgata |
368 |
Q |
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| T |
7859544 |
tgcatatagttaaatttggtcattcttttgagacgcgggagtaaaatgatgaacaatgata |
7859604 |
T |
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