View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19947_low_13 (Length: 363)

Name: NF19947_low_13
Description: NF19947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19947_low_13
NF19947_low_13
[»] chr1 (4 HSPs)
chr1 (13-176)||(12198916-12199079)
chr1 (234-345)||(12199144-12199255)
chr1 (89-134)||(11910444-11910489)
chr1 (30-66)||(11910408-11910444)
[»] chr4 (1 HSPs)
chr4 (21-134)||(36083830-36083936)
[»] chr6 (2 HSPs)
chr6 (70-123)||(13480050-13480103)
chr6 (24-60)||(9229798-9229834)
[»] chr5 (3 HSPs)
chr5 (70-130)||(12089412-12089472)
chr5 (131-176)||(40107350-40107395)
chr5 (71-123)||(19934836-19934888)
[»] chr7 (1 HSPs)
chr7 (24-59)||(1830350-1830385)
[»] chr8 (1 HSPs)
chr8 (24-76)||(552692-552744)
[»] chr3 (1 HSPs)
chr3 (24-60)||(28723542-28723578)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 12198916 - 12199079
Alignment:
Q  13 cagagcgttataaatataaattatagaagatacaatttttaaacattttagtaatatgaacaaaagaatgtttaacaattgtacttatcaaacaacatac 112  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12198916 cagaacgttataaatataaattatacaagatacaatttttaaacattttagtaatatgaacaaaagaatgtttaacaattgtacttatcaaacaacatac 12199015  T
Q  113 taagattaaaataaacacacattacagtgcccatgtccattggggattcagtagatagtcttat 176  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12199016 taagattaaaagaaacacacattacagtgcccatgtccattggggattcagtagatagtcttat 12199079  T

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Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 234 - 345
Target Start/End: Original strand, 12199144 - 12199255
Alignment:
Q  234 catccatttctatttgatgatgtataactaaacaacttataaacttacctcttgacaccactgcagtagcaactatatacaacttcctgaaattgataat 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  12199144 catccatttctatttgatgatgtataactaaacaacttataaacttacctcttgacaccactgcagtagcaactatatacaacttcctgaaattgataaa 12199243  T
Q  334 ttgatgtaagag 345  Q
    ||||||||||||    
T  12199244 ttgatgtaagag 12199255  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 11910444 - 11910489
Alignment:
Q  89 aattgtacttatcaaacaacatactaagattaaaataaacacacat 134  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||||    
T  11910444 aattgcacttatcaaacaacatactaagagtaaaagaaacacacat 11910489  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 11910408 - 11910444
Alignment:
Q  30 aaattatagaagatacaatttttaaacattttagtaa 66  Q
    |||||||| |||||||||||||||||||||| |||||    
T  11910408 aaattatacaagatacaatttttaaacatttcagtaa 11910444  T

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Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 36083830 - 36083936
Alignment:
Q  21 tataaatataaattatagaagatacaatttttaaacattttagtaatatgaacaaaagaatgtttaacaattgtacttatcaaacaacatactaagatta 120  Q
    |||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||       |||||||| ||||||||||||||||||||||||||    
T  36083830 tataaatataaattatagaagatacaatttttaaacatttaagcaatttgaacaaaag-------aacaattgcacttatcaaacaacatactaagatta 36083922  T
Q  121 aaataaacacacat 134  Q
    ||| || |||||||    
T  36083923 aaagaaccacacat 36083936  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 13480103 - 13480050
Alignment:
Q  70 gaacaaaagaatgtttaacaattgtacttatcaaacaacatactaagattaaaa 123  Q
    |||||||||||||||||||||||| ||| |||| |||||||  |||||||||||    
T  13480103 gaacaaaagaatgtttaacaattgcactcatcatacaacattttaagattaaaa 13480050  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 9229798 - 9229834
Alignment:
Q  24 aaatataaattatagaagatacaatttttaaacattt 60  Q
    ||||||||||| || ||||||||||||||||||||||    
T  9229798 aaatataaattttaaaagatacaatttttaaacattt 9229834  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 12089412 - 12089472
Alignment:
Q  70 gaacaaaagaatgtttaacaattgtacttatcaaacaacatactaagattaaaataaacac 130  Q
    |||||||||||||||||||||||  ||| |||| |||||||| ||| ||||||| ||||||    
T  12089412 gaacaaaagaatgtttaacaattacactcatcatacaacataataaaattaaaagaaacac 12089472  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 40107395 - 40107350
Alignment:
Q  131 acattacagtgcccatgtccattggggattcagtagatagtcttat 176  Q
    |||||||||||| ||||| ||| ||||||||||||||| |||||||    
T  40107395 acattacagtgcacatgttcatcggggattcagtagatggtcttat 40107350  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 19934888 - 19934836
Alignment:
Q  71 aacaaaagaatgtttaacaattgtacttatcaaacaacatactaagattaaaa 123  Q
    |||||||||||||| |||||||| ||| |||||||| |||| ||| |||||||    
T  19934888 aacaaaagaatgttcaacaattgcactaatcaaacatcataataaaattaaaa 19934836  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 1830385 - 1830350
Alignment:
Q  24 aaatataaattatagaagatacaatttttaaacatt 59  Q
    |||||||||||||| |||||||||||||||||||||    
T  1830385 aaatataaattatataagatacaatttttaaacatt 1830350  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 552692 - 552744
Alignment:
Q  24 aaatataaattatagaagatacaatttttaaacattttagtaatatgaacaaa 76  Q
    |||||||||||||| |||||||| |||||||| ||||||| |||  |||||||    
T  552692 aaatataaattataaaagatacagtttttaaatattttagcaattagaacaaa 552744  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 28723542 - 28723578
Alignment:
Q  24 aaatataaattatagaagatacaatttttaaacattt 60  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  28723542 aaatataaattatataagatgcaatttttaaacattt 28723578  T

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