View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19947_low_14 (Length: 329)
Name: NF19947_low_14
Description: NF19947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19947_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 50834588 - 50834919
Alignment:
| Q |
1 |
tcccgtctttccatgggcacattctcctgtacctttcacatggattcttggcatcaattctccaagcccataaccatatatttagtgtgtctatgtaatt |
100 |
Q |
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| T |
50834588 |
tcccgtctttccatgggcatattctcctgtacctttcacatggattcttggcatcaattctccaagcccataaccatatatttagtgtgtctatgtaatt |
50834687 |
T |
|
| Q |
101 |
tctattta--------ttagtcaatccca---ttctgtttcagagttataaatgtattctggataatttaaaacaatcagtttgagtcgtgaattttgtt |
189 |
Q |
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| T |
50834688 |
tctatttacataattattagtcaatcccaatattctgtttcagagttataaatatattctggataatttgaaataatcagtttgagtcgtgaattttgtt |
50834787 |
T |
|
| Q |
190 |
cattttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctcttggtttcttgaaattcaaaggttgttctatct |
289 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50834788 |
catgttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctcttggtttcttgaaattccaaggttgttctatct |
50834887 |
T |
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| Q |
290 |
ttctttcttattttgttacattattttcttgg |
321 |
Q |
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||||||||||| ||||||||||||||| |||| |
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| T |
50834888 |
ttctttcttatgttgttacattatttttttgg |
50834919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 50841265 - 50840934
Alignment:
| Q |
1 |
tcccgtctttccatgggcacattctcctgtacctttcacatggattcttggcatcaattctccaagcccataaccatatatttagtgtgtctatgtaatt |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50841265 |
tcccgtctttccatgggcatattctcctgtacctttcacatggattcttggcatcaattctccaagcccataaccatatatttagtgtgtctatgtaatt |
50841166 |
T |
|
| Q |
101 |
tctattta--------ttagtcaatccca---ttctgtttcagagttataaatgtattctggataatttaaaacaatcagtttgagtcgtgaattttgtt |
189 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
50841165 |
tctatttacataattattagtcaatcccaatattctgtttcagagttataaatatattctggataatttgaaataatcagtttgagtcgtgaattttgtt |
50841066 |
T |
|
| Q |
190 |
cattttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctcttggtttcttgaaattcaaaggttgttctatct |
289 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50841065 |
catgttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctcttggtttcttgaaattccaaggttgttctatct |
50840966 |
T |
|
| Q |
290 |
ttctttcttattttgttacattattttcttgg |
321 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| |
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| T |
50840965 |
ttctttcttatgttgttacattatttttttgg |
50840934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 164 - 316
Target Start/End: Original strand, 11729632 - 11729784
Alignment:
| Q |
164 |
aatcagtttgagtcgtgaattttgttcattttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctcttggttt |
263 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11729632 |
aatcagtttgagtcgtgaattttgttcatgttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctcttggttt |
11729731 |
T |
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| Q |
264 |
cttgaaattcaaaggttgttctatctttctttcttattttgttacattatttt |
316 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11729732 |
cttgaaattccaaggttgttctatctttctttcttattttgttacattatttt |
11729784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 164 - 316
Target Start/End: Original strand, 23739944 - 23740096
Alignment:
| Q |
164 |
aatcagtttgagtcgtgaattttgttcattttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctcttggttt |
263 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23739944 |
aatcagtttgagtcgtgaattttgttcatgttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctcttggttt |
23740043 |
T |
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| Q |
264 |
cttgaaattcaaaggttgttctatctttctttcttattttgttacattatttt |
316 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23740044 |
cttgaaattccaaggttgttctatctttctttcttattttgttacattatttt |
23740096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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