View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19947_low_15 (Length: 329)
Name: NF19947_low_15
Description: NF19947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19947_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 38325246 - 38324950
Alignment:
| Q |
17 |
agatttctctttcatgtacaaatgagtgacataagcctcaataacatttgtaggaggtataacagcatttcgatttaaagtctcagtgtacctcctcatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38325246 |
agatttctctttcatgtacaaatgagtgacataagcctcaataacatttgtaggaggtataacagcatttcgatttaaagtctcagtgtacctcctcatt |
38325147 |
T |
|
| Q |
117 |
ccctcgtgctccaaaaaatcaaagggtaaatcaagtgcaaggatcatagaagcacatgcatccacaacccgtgattcgctttgatctacctcatcgtcaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
38325146 |
ccctcgtgctccaaaaaatcaaagggtaaatcaagtgcaaggatcatagaagcacatgcatccacaacccgtgattaggtttgatctacctcatcgtcaa |
38325047 |
T |
|
| Q |
217 |
attccattttttcttgtgacatgacttccacaacctagattccatttcagcattataaattattattacattttttcaaaatcacatgttagaataa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38325046 |
attccattttttcttgtgacatgacttccacaacctagattccatttcagcattataaattattattacattttttcaaaatcatatgttagaataa |
38324950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 38316398 - 38316149
Alignment:
| Q |
20 |
tttctctttcatgtacaaatgagtgacataagcctcaataacatttgtaggaggtataacagcatttcgatttaaagtctcagtgtacctcctcattccc |
119 |
Q |
| |
|
|||||||||| |||||||||| | ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| |||||||| || |
|
|
| T |
38316398 |
tttctctttcgtgtacaaatgcgaaacataagcctcaataacatttgtcggaggtataacagcatttggatttaagaactcagtgtacttcctcattacc |
38316299 |
T |
|
| Q |
120 |
tcgtgctccaaaaaatcaaagggtaaatcaagtgcaaggatcatagaagcacatgcatccacaacccgtgattcgctttgatctacctcatcgtcaaatt |
219 |
Q |
| |
|
||| |||||||||||| |||||| |||||| ||||||||||||||||||| ||| | || ||| ||||||| ||||| |||||||| | ||||||| |
|
|
| T |
38316298 |
tcgagctccaaaaaattaaagggcaaatcatgtgcaaggatcatagaagcgcatatacccgcaaattgtgattccctttgttctacctcgttatcaaatt |
38316199 |
T |
|
| Q |
220 |
ccattttttcttgtgacatgacttccacaacctagattccatttcagcat |
269 |
Q |
| |
|
|||| |||||||||||| | |||| || ||||||||| ||||||||||| |
|
|
| T |
38316198 |
ccatattttcttgtgacgttgcttcgacgacctagattacatttcagcat |
38316149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 38320496 - 38320344
Alignment:
| Q |
20 |
tttctctttcatgtacaaatgagtgacataagcctcaataacatttgtaggaggtataacagcatttcgatttaaagtctcagtgtacctcctcattccc |
119 |
Q |
| |
|
|||| ||||| ||||||||| | ||||||||||| |||||||||| ||||||| |||||||||||| ||||||| || || | | ||||| ||| |
|
|
| T |
38320496 |
tttcgctttcgtgtacaaatccgagacataagccttaataacatttataggaggcataacagcatttggatttaagaccttcatgaagttactcataccc |
38320397 |
T |
|
| Q |
120 |
tcgtgctccaaaaaatcaaagggtaaatcaagtgcaaggatcatagaagcaca |
172 |
Q |
| |
|
||| |||| |||||||||||||| |||||| || |||||||||||||||||| |
|
|
| T |
38320396 |
tcgcgctcaaaaaaatcaaagggaaaatcatttgaaaggatcatagaagcaca |
38320344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 38305670 - 38305517
Alignment:
| Q |
20 |
tttctctttcatgtacaaatgagtgacataagcctcaataacatttgtaggaggtataacagcatttcgatttaaagtctcagtgtacctcctcattccc |
119 |
Q |
| |
|
||||||||||||||| |||| || |||||||||||||||||||| | |||||| | |||| |||| ||||||| || || | ||||||| ||| |
|
|
| T |
38305670 |
tttctctttcatgtataaatcagagacataagcctcaataacatctacaggaggcaaaacaatatttggatttaagaccttcatgaagttcctcatcccc |
38305571 |
T |
|
| Q |
120 |
tcgtgctccaaaaaatcaaagggtaaatcaagtgcaaggatcatagaagcacat |
173 |
Q |
| |
|
||| |||| ||||| |||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
38305570 |
tcgcgctcaaaaaactcaaagggaaaatcatttgaaaggatcatagaagcacat |
38305517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 38312974 - 38312911
Alignment:
| Q |
31 |
tgtacaaatgagtgacataagcctcaataacatttgtaggaggtataacagcatttcgatttaa |
94 |
Q |
| |
|
||||||||| | |||||||||||||| |||||||| |||||| |||||| ||||| ||||||| |
|
|
| T |
38312974 |
tgtacaaatcggagacataagcctcaagaacatttgaaggaggcataacaacatttggatttaa |
38312911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 38850947 - 38851158
Alignment:
| Q |
20 |
tttctctttcatgtacaaatgagtgacataagcctcaataacatttgtaggaggtataacagcatttcgatttaaagtctcagtgtacctcctcattccc |
119 |
Q |
| |
|
|||||||||| |||||||||| | || ||||| || ||||||||| ||||||||||| | |||| ||||||| ||| | |||| ||||||||||| |
|
|
| T |
38850947 |
tttctctttcgtgtacaaatgtgaaacgtaagcttcgataacatttctaggaggtataggaatatttggatttaagaactcggagtacttcctcattccc |
38851046 |
T |
|
| Q |
120 |
tcgtgctccaaaaaatcaaagggtaaatcaagtgcaaggatcatagaagcacatgcatccacaacccgtgattcgctttgatctacctcatcgtcaaatt |
219 |
Q |
| |
|
||| |||| ||||||| |||||| |||||| ||||||||||| ||||||||||| ||||||| ||||| || |||||||||| || | ||||||| |
|
|
| T |
38851047 |
tcgagctcgaaaaaatgaaagggcaaatcatgtgcaaggatcgtagaagcacatatttccacaaagcgtgaatccatttgatctacttcgttatcaaatt |
38851146 |
T |
|
| Q |
220 |
ccattttttctt |
231 |
Q |
| |
|
| || ||||||| |
|
|
| T |
38851147 |
ctatcttttctt |
38851158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University