View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19947_low_19 (Length: 296)
Name: NF19947_low_19
Description: NF19947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19947_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 36915309 - 36915047
Alignment:
| Q |
18 |
attgcaccaaccatgctttaaaatgttttgtccacaaaaattgcgccaacttgtaaatttaattttgccaattttttctgttcagcgccaaaatgctttt |
117 |
Q |
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| T |
36915309 |
attgcaccaaccatgctttaaaatgttttgtccacaaaaatcgcgccaacttgtaaatttaattttgccaattttttctgttcagcgccaaaatgctttt |
36915210 |
T |
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| Q |
118 |
cattcttaatctttataaatagaccagtttagtaggagtattaaacacattaattctatatcataaaatggctatgagagaaatagatttgaatgttact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36915209 |
cattcttaatctttataaatagaccagtttagtaggagtattaaacacatcaattctatatcataaaatggctatgagagaaatagatttgaatgttact |
36915110 |
T |
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| Q |
218 |
cctacgatagaagaatttgatgataacatcaataaaagtacttctacttcaatgcttcaaact |
280 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36915109 |
cctacgatagaaaaatttgatgataacatcaatcaaagtacttctacttcaatgcttcaaact |
36915047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 11168623 - 11168360
Alignment:
| Q |
18 |
attgcaccaaccatgctttaaaatgttttgtccacaaaaattgcgccaacttgtaaatttaattttgccaatttttt-ctgttcagcgccaaaatgcttt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11168623 |
attgcaccaaccatgctttaaaatgttttgtccacaaaaattgcgccaacttgtaaatttaattttgccaatttttttctgttcagcgccaaaatgcttt |
11168524 |
T |
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| Q |
117 |
tcattcttaatctttataaatagaccagtttagtaggagtattaaacacattaattctatatcataaaatggctatgagagaaatagatttgaatgttac |
216 |
Q |
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| T |
11168523 |
tcattgttaatctttataaatagaccagtttagtaggagtattaaacacatcaattctatatcataaaatgactatgagagaaatagatttgaatgttac |
11168424 |
T |
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| Q |
217 |
tcctacgatagaagaatttgatgataacatcaataaaagtacttctacttcaatgcttcaaact |
280 |
Q |
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||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
11168423 |
tcctacgatagaaaaatttgatgataacatcaatcaaattacttctacttcaatgcttcaaact |
11168360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 15566853 - 15566663
Alignment:
| Q |
18 |
attgcaccaaccatgctttaaaatgttttgtccacaaaaattgcgccaacttgtaaatttaattttgccaattttttctgttcagcgccaaaatgctttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15566853 |
attgcaccaaccatgctttaaaatgttttgtccacaaaaattgcgccaacttgtaaatttaattttgccaattttttctgttcagcgccaaaatgctttt |
15566754 |
T |
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| Q |
118 |
cattcttaatctttataaatagaccagtttagtaggagtattaaacacattaattctatatcataaaatggctatgagagaaatagatttg |
208 |
Q |
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| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15566753 |
cgttcttaatctttataaatagaccagtttaataggagtattaaacacatcaattctatatcataaaatggctatgagagaaatagatttg |
15566663 |
T |
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