View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19947_low_20 (Length: 274)
Name: NF19947_low_20
Description: NF19947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19947_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 18947402 - 18947665
Alignment:
| Q |
1 |
ttatttactggaaaataaacacatgcctctgctcttcctcctttgctcttcctccattgccgaccctttacgtcaatcatcatcttcttcctccattgtt |
100 |
Q |
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| T |
18947402 |
ttatttaccggaaaataaacacacgcctctgctcttcctcctttgctcttcctccattgccgaccctttacgtcaatcatcatcttcttcctccattgtt |
18947501 |
T |
|
| Q |
101 |
ctgtttctctttgttctatttttctcattatcactgtttatgt-tctaactcttctttttgatgggtcataaaaattaagtatgattccaagtctggaat |
199 |
Q |
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| T |
18947502 |
ctgtttctctttgttctatttttctcattatcactgcttatgtctctaactcttctttttgatgggtcataaaaattaagtatgattccaagtctggaat |
18947601 |
T |
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| Q |
200 |
caacaacacaaccaccgtcttaaagctctctattctcttcaagccaccgtcaccaatttcatctc |
264 |
Q |
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| T |
18947602 |
caacaacacaaccaccgtcttaaa-ctctctattctcttcaagccaccgtcaccaatttcatctc |
18947665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 6204839 - 6204902
Alignment:
| Q |
149 |
ctcttctttttgatgggtcataaaaattaagtatgattccaagtctggaatcaacaacacaacc |
212 |
Q |
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| T |
6204839 |
ctcttctttttgatggatcatccaaaataagtatgattccaagtctggaatcaacagcacaacc |
6204902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 6204626 - 6204712
Alignment:
| Q |
4 |
tttactggaaaataaacaca-tgcctctgctcttcctcctttgctcttcctccattgccgacccttt-acgtcaatcatcatcttcttc |
90 |
Q |
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| T |
6204626 |
tttactggaaaataaacacaatgtctctgct--tcctcctttgctcttcctccgtcaccgaccctttaacctcaatcatcatcttcttc |
6204712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 29984774 - 29984736
Alignment:
| Q |
4 |
tttactggaaaataaacacatgcctctgctcttcctcct |
42 |
Q |
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|||| ||||||||||||||| |||||||||||||||||| |
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| T |
29984774 |
tttattggaaaataaacacacgcctctgctcttcctcct |
29984736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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