View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19947_low_21 (Length: 266)
Name: NF19947_low_21
Description: NF19947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19947_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 32671367 - 32671111
Alignment:
| Q |
1 |
caccacgttatgaggtattgttcgctttggatcttatgtatgcccttacagttttatcttttgtaataggtgtctcagcagattgaggagtgaggtttat |
100 |
Q |
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| T |
32671367 |
caccacgttatgagatattgttcgctttggatcttatgtatgccctcacagttttatcttttgtaataggtgtctcaacaggttgaggagcgaggtttat |
32671268 |
T |
|
| Q |
101 |
ttatttaaaatatatcctcagcctcgattcccaaacaatagagagagggtatacaaagcaataaatgggaaagaggacatttaaggatggagattggaaa |
200 |
Q |
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| T |
32671267 |
ttatttaaaatatatcctcagcctcgattcccaaacaatagagagagggtatacaaagcaatacatgggaaagaggacatttaaggatggagattggaaa |
32671168 |
T |
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| Q |
201 |
agtgaaatgctatgtgtagcgaaatgtttttcacgaattcatctcgaccagtataat |
257 |
Q |
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| T |
32671167 |
agtgaaatgctatgtgtagcgaaatgtttttcacgaattcatctcgaccagtgtaat |
32671111 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 45505392 - 45505437
Alignment:
| Q |
204 |
gaaatgctatgtgtagcgaaatgtttttcacgaattcatctcgacc |
249 |
Q |
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| T |
45505392 |
gaaatgctatgtatagcgaaatgtttttcactaattcatctcgacc |
45505437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 44533145 - 44533198
Alignment:
| Q |
204 |
gaaatgctatgtgtagcgaaatgtttttcacgaattcatctcgaccagtataat |
257 |
Q |
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| T |
44533145 |
gaaatgctatgtatagcaaaatgtttttcacgaattcatcccgaccagtgtaat |
44533198 |
T |
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