View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19947_low_22 (Length: 265)
Name: NF19947_low_22
Description: NF19947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19947_low_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 6359572 - 6359832
Alignment:
| Q |
1 |
ctccacttcacaaaagtaaaatcccaaccaaatccatgtcacacaaatccccaaaaataatcacnnnnnnnattattccaccacctatggggaagctaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
6359572 |
ctccacttcacaaaagtaaaatcccaaccaaatccatgtcacacaaatccccaaaaataatcactttttt-attattccac---ctatggggaagctaat |
6359667 |
T |
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| Q |
101 |
aacaacttccaaacctctcattctcaaatcaaaactcctctgtttttcacttttctatctcttcaccactctttttcttgctctttacaccaccctctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6359668 |
aacaacttccaaacctctcattctcaaatcaaaactcctctgtttttcacttttctatctcttcaccactctttttcttgctctttacaccaccctctcc |
6359767 |
T |
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| Q |
201 |
caatccaaatgcttcttcagatcatccccttcagatcccattctcaattctctcttcaattaccc |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6359768 |
caatccaaatgcttcttcagatcatccccttcagatcccattctcaattctctcttcaattaccc |
6359832 |
T |
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