View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19947_low_23 (Length: 260)
Name: NF19947_low_23
Description: NF19947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19947_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 4651581 - 4651354
Alignment:
| Q |
19 |
acataagaatgaagatcctccttttctttgttgtcacactcttagcaacatgtcatggtaatgttgaaaaccatgaacatgaatcaaacttcaacatttt |
118 |
Q |
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| T |
4651581 |
acataagaatgaagatcctccttttctttcttgtcacactcttagcaacatgtcatggtaatgttcaaaaccatgaacatgaatcaaatttcaacatttt |
4651482 |
T |
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| Q |
119 |
ccctctccgaatgaaaactggtccaggtggaaaatacattccagaagtgtcatgtgctagttggagagttgctgttgaagcacgtaacatcattaactgg |
218 |
Q |
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| T |
4651481 |
ccctctccgaatgaaaactggtccaggtggaaaatacattccagaagtgtcatgtgctagttggagagttgctgttgaagcacgtaacatcattaactgg |
4651382 |
T |
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| Q |
219 |
aaaactgttcctcaagaatgtgaagaat |
246 |
Q |
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| T |
4651381 |
aaaactgttcctcaagaatgtgaagaat |
4651354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 96 - 246
Target Start/End: Original strand, 23678678 - 23678828
Alignment:
| Q |
96 |
catgaatcaaacttcaacattttccctctccgaatgaaaactggtccaggtggaaaatacattccagaagtgtcatgtgctagttggagagttgctgttg |
195 |
Q |
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| T |
23678678 |
catgaatcaaccttcaacattttccctctccgaatgaaaactggtccaggtggaaaatacattccagacgtgtcatgtgctagttggagagttattgttg |
23678777 |
T |
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| Q |
196 |
aagcacgtaacatcattaactggaaaactgttcctcaagaatgtgaagaat |
246 |
Q |
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| T |
23678778 |
aagcacataacatcattaaccggaaaactgttcctcaagaatgtgaagaat |
23678828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 23676492 - 23676574
Alignment:
| Q |
19 |
acataagaatgaagatcctccttttctttgttgtcacactcttagcaacatgtcatggtaatgttgaaaaccatgaacatgaa |
101 |
Q |
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| T |
23676492 |
acataaaaatgaagatcctccttttctttgttgttacactcttagcaacatgtcatggtaatgttgtaaaccatgaacatgaa |
23676574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 23698816 - 23699040
Alignment:
| Q |
20 |
cataagaatgaagatcctccttttctttgttgtcacactctt---agcaacatgtcatggtaatgttgaaaaccatgaacatgaatcaaacttcaacatt |
116 |
Q |
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||||||||||||||||||| |||||||| |||| |||||||| |||||||||||||||||| || ||||||||| |||| ||||| | | ||| |
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| T |
23698816 |
cataagaatgaagatcctcattttcttttttgttacactcttcttagcaacatgtcatggtaacattctaaaccatgatcatggttcaaataaccaaatt |
23698915 |
T |
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| Q |
117 |
ttccctctccgaatgaaaactggtccaggtggaaaatacattccagaagtgtcatgtgctagttggagagttgctgttgaagcacgtaacatcattaact |
216 |
Q |
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| T |
23698916 |
ttcccacttcgagtgaaatctggctcaggtggccactacattccaaaagtatcatgtgctagttggagacttggtgttgaagcacacaatatcataaatt |
23699015 |
T |
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| Q |
217 |
ggaaaactgttcctcaagaatgtga |
241 |
Q |
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| T |
23699016 |
ggaaaactataccgcaagaatgtga |
23699040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 241
Target Start/End: Complemental strand, 4647020 - 4646802
Alignment:
| Q |
29 |
gaagatcctccttttctttgttgtcacactcttagcaacatgtcatggtaatgttgaaaacc------atgaacatgaatcaaacttcaacattttccct |
122 |
Q |
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|||||||||| |||||||| |||| |||||||||| |||||||||||||| || ||||| |||| |||| ||||| | | |||||||| |
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| T |
4647020 |
gaagatcctcattttcttttttgttacactcttagttacatgtcatggtaacattctaaaccatgatgatgatcatggttcaaataaccaaattttccca |
4646921 |
T |
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| Q |
123 |
ctccgaatgaaaactggtccaggtggaaaatacattccagaagtgtcatgtgctagttggagagttgctgttgaagcacgtaacatcattaactggaaaa |
222 |
Q |
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| T |
4646920 |
cttcgagtgaaatctggctcaggtggccattacattgaagaagtatcatgtgctagttggagacttggtattgaagcacacaacatcataaattggaaaa |
4646821 |
T |
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| Q |
223 |
ctgttcctcaagaatgtga |
241 |
Q |
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| T |
4646820 |
ctataccaaaagaatgtga |
4646802 |
T |
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