View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19947_low_28 (Length: 224)

Name: NF19947_low_28
Description: NF19947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19947_low_28
NF19947_low_28
[»] chr7 (13 HSPs)
chr7 (16-210)||(31594923-31595117)
chr7 (22-209)||(31604538-31604725)
chr7 (22-209)||(31614413-31614600)
chr7 (16-209)||(31608123-31608319)
chr7 (16-209)||(31618136-31618329)
chr7 (16-209)||(31575863-31576059)
chr7 (22-210)||(31532268-31532459)
chr7 (16-209)||(31585273-31585469)
chr7 (16-209)||(31540888-31541081)
chr7 (98-206)||(31573006-31573114)
chr7 (22-139)||(31439256-31439373)
chr7 (27-210)||(33305317-33305497)
chr7 (24-131)||(21898516-21898623)
[»] chr1 (1 HSPs)
chr1 (16-210)||(52174479-52174673)
[»] chr4 (1 HSPs)
chr4 (24-210)||(15063532-15063718)
[»] scaffold0394 (1 HSPs)
scaffold0394 (24-210)||(1816-2002)


Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 31594923 - 31595117
Alignment:
Q  16 cataggctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31594923 cataggctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaa 31595022  T
Q  116 tccagtctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataactg 210  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31595023 tccagtctggaaagtacatttcagaagtacacgaccctccagtttgatagttctttcttcctccaatcatttcaagaatcaacataccataactg 31595117  T

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Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 31604538 - 31604725
Alignment:
Q  22 ctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaatccagt 121  Q
    ||||||| |||||||||| | |||||||||||||||||||| || | |||| || |||||||||||  |||||||||||||||||||||||||||||| |    
T  31604538 ctcaccaaagtaatctttctgaccatatcattttcttcctccgagactgtcgaacaatttaaaagagtattaccttgctcaagatccttataaatccaat 31604637  T
Q  122 ctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataact 209  Q
    ||||||||||||||||||| ||||| ||||| ||| | |  |||||||| |||||||| |||||||||||||||||||||||||||||    
T  31604638 ctggaaagtacatttcagaagtacatgacccgccagtgtcgtagttcttccttcctccgatcatttcaagaatcaacatgccataact 31604725  T

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Target: chr7; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 31614413 - 31614600
Alignment:
Q  22 ctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaatccagt 121  Q
    ||||||| ||| |||||| ||| ||||||||||||||||||||| ||||||||| |||||||||||   |||  ||||||||||| |||||||||||| |    
T  31614413 ctcaccaaagtgatctttctaatcatatcattttcttcctctgagattgtcaaacaatttaaaagagtgttattttgctcaagattcttataaatccaat 31614512  T
Q  122 ctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataact 209  Q
    ||||||||||||||||||| || || ||||||||| | | ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31614513 ctggaaagtacatttcagaagtgcatgaccctccagtgtcatagttctttcttcctccaatcatttcaagaatcaacattccataact 31614600  T

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Target: chr7; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 31608123 - 31608319
Alignment:
Q  16 cataggctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcat---taccttgctcaagatccttat 112  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||  ||| ||||||||   |||||||| |  ||   |||||||||||||||||||||    
T  31608123 catagactcaccatagtaatctttctaaccatatcattttcttccgttgagattgtcaacccatttaaaacagtatggttaccttgctcaagatccttat 31608222  T
Q  113 aaatccagtctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataact 209  Q
    |||||||||||||||||||||||||||| ||||| ||||| ||| | |  |||||||| ||||||||||||||||||||||||||||||||||||||    
T  31608223 aaatccagtctggaaagtacatttcagaagtacatgacccgccagtgtcgtagttcttccttcctccaatcatttcaagaatcaacatgccataact 31608319  T

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Target: chr7; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 31618136 - 31618329
Alignment:
Q  16 cataggctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaa 115  Q
    ||||| ||||||| |||||||||| | | |||||||||||||||||| || |||||  || |||||||||||  ||| ||||||||||||||||||||||    
T  31618136 catagactcaccaaagtaatctttctgatcatatcattttcttcctccgagattgttgaacaatttaaaagagtattcccttgctcaagatccttataaa 31618235  T
Q  116 tccagtctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataact 209  Q
    |||| |||||||||||||||||||| ||||| ||||||||  | |  |||||||| |||||||| |||||||||||||||||||||||||||||    
T  31618236 tccaatctggaaagtacatttcagaagtacatgaccctcccgtgtcgtagttcttccttcctccgatcatttcaagaatcaacatgccataact 31618329  T

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Target: chr7; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 31575863 - 31576059
Alignment:
Q  16 cataggctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaag---atcattaccttgctcaagatccttat 112  Q
    ||||| ||||||| |||||||||| |||||||||||||||||||||||||   ||||| | | || |||||   || |||||||||||||||||||||||    
T  31575863 catagactcaccaaagtaatctttctaaccatatcattttcttcctctgacgatgtcatacagttaaaaaggttattattaccttgctcaagatccttat 31575962  T
Q  113 aaatccagtctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataact 209  Q
    ||||||| |||||||| |||||||| |  ||||||||||||||| | | ||||||||| |||||||| |||||||||||||||||||||||||||||    
T  31575963 aaatccaatctggaaaatacatttccggagtacacgaccctccagtgtcatagttcttccttcctccgatcatttcaagaatcaacatgccataact 31576059  T

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Target: chr7; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 22 - 210
Target Start/End: Original strand, 31532268 - 31532459
Alignment:
Q  22 ctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaag---atcattaccttgctcaagatccttataaatcc 118  Q
    |||||||||||||||||| | |||||||||||||||||||||||| ||   ||| |||| | |||   || ||||||||| |||||||||||||||||||    
T  31532268 ctcaccatagtaatctttctcaccatatcattttcttcctctgaattttctaaataattcacaaggttattattaccttgttcaagatccttataaatcc 31532367  T
Q  119 agtctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataactg 210  Q
    |||| ||||||||||||||||| ||||| ||||||||| | | ||| ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  31532368 agtcaggaaagtacatttcagaagtacatgaccctccagtgtcataattctttcttcctccaatcatttctagaattaacatcccataactg 31532459  T

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Target: chr7; HSP #8
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 31585273 - 31585469
Alignment:
Q  16 cataggctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaaga---tcattaccttgctcaagatccttat 112  Q
    ||||| || ||||||||||||||| ||||||| ||||||||||| || || ||||||||| |||||||||||   |||||||||||||||||||||||||    
T  31585273 catagacttaccatagtaatctttctaaccatgtcattttcttcttcggagattgtcaaacaatttaaaagaggttcattaccttgctcaagatccttat 31585372  T
Q  113 aaatccagtctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataact 209  Q
    ||||||| |||||||||||||||||||| | ||| || |||||  | |  |||||||| || ||||| || ||||| ||||||| ||||||||||||    
T  31585373 aaatccaatctggaaagtacatttcagaagcacatgaacctcctgtgtcgtagttcttcctacctccgataatttctagaatcagcatgccataact 31585469  T

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Target: chr7; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 31540888 - 31541081
Alignment:
Q  16 cataggctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaa 115  Q
    ||||| ||||||||||||||| || | ||||||||||||||||||| |||  |||  ||| ||||   ||| | |||| |||||||||||||||||||||    
T  31540888 catagactcaccatagtaatcattcttaccatatcattttcttcctttgagtttgctaaacaattagcaaggttattagcttgctcaagatccttataaa 31540987  T
Q  116 tccagtctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataact 209  Q
    |||| ||||||||  |||||||||| ||||| ||||||||| | | ||| ||||||||||| |||| |||||| ||||| ||||| ||||||||    
T  31540988 tccaatctggaaaacacatttcagaagtacatgaccctccagtgtcataattctttcttcccccaaccatttctagaattaacataccataact 31541081  T

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Target: chr7; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 98 - 206
Target Start/End: Complemental strand, 31573114 - 31573006
Alignment:
Q  98 gctcaagatccttataaatccagtctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaa 197  Q
    |||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||  | | ||||||||||||||| ||||||||||| | ||| ||    
T  31573114 gctcaagatcattataaatccaatctggaaagtacatttcagaagtacacgaccctcctgtgtcatagttctttcttccaccaatcatttctaaaattaa 31573015  T
Q  198 catgccata 206  Q
    ||| |||||    
T  31573014 cataccata 31573006  T

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Target: chr7; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 31439373 - 31439256
Alignment:
Q  22 ctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaatccagt 121  Q
    ||||||||||||||||| || || |||||||||||||| || || ||||| |||  |||| |||||  |||||||||||||||||||||||| ||||| |    
T  31439373 ctcaccatagtaatcttctttacgatatcattttcttcttcggagattgttaaattatttgaaagagtattaccttgctcaagatccttatatatccaat 31439274  T
Q  122 ctggaaagtacatttcag 139  Q
    | ||||||||||||||||    
T  31439273 ccggaaagtacatttcag 31439256  T

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Target: chr7; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 33305497 - 33305317
Alignment:
Q  27 catagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaatccagtctgga 126  Q
    ||||||||||||| |  |||||||||||||||| |||||  |||   || ||||   ||| | ||||| | |||||||||||||||||||||| |||| |    
T  33305497 catagtaatctttcttgccatatcattttcttcttctgagtttgcagaacaatt---aaggttattacttagctcaagatccttataaatccaatctgaa 33305401  T
Q  127 aagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataactg 210  Q
    ||||||||||| |||||||| ||||||||  | | ||| ||||||||||| || |||||||| || || ||||| |||||||||    
T  33305400 aagtacatttccgatgtacatgaccctcccgtgtcataattctttcttcccccgatcatttctagtattaacataccataactg 33305317  T

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Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 21898623 - 21898516
Alignment:
Q  24 caccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaatccagtct 123  Q
    ||||||||||||||||   |  |||||||| |||||||||||||||   |||||||| | ||| |  |||||||| | |||||| ||||| |||||||||    
T  21898623 caccatagtaatctttcgtattatatcattctcttcctctgaaatttcaaaagaattcacaaggttgttaccttgttgaagatcattatagatccagtct 21898524  T
Q  124 ggaaagta 131  Q
    ||||||||    
T  21898523 ggaaagta 21898516  T

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Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 52174673 - 52174479
Alignment:
Q  16 cataggctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaa 115  Q
    ||||| ||||||| |||||||||| ||||||||||||||||||||||||| ||||||||| ||||| |||||  ||| ||||||||||||||||||||||    
T  52174673 catagactcaccaaagtaatctttataaccatatcattttcttcctctgagattgtcaaacaatttgaaagagtatttccttgctcaagatccttataaa 52174574  T
Q  116 tccagtctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataactg 210  Q
    |||||||||||||||||||||| || ||||| ||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  52174573 tccagtctggaaagtacatttctgaagtacatgaccctccagtgtcatagttctttcttcctccaatcatttcaagaatcaacatgccataactg 52174479  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 210
Target Start/End: Complemental strand, 15063718 - 15063532
Alignment:
Q  24 caccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaatccagtct 123  Q
    ||||||||||||||| || | ||||||||||||||| ||||| |||| ||||  |||||||||   |||||||||||||||||||||| | ||||| ||     
T  15063718 caccatagtaatcttctttagcatatcattttcttcttctgagattgccaaactatttaaaagggaattaccttgctcaagatccttaaatatccaatcc 15063619  T
Q  124 ggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataactg 210  Q
    ||||||||   ||| | ||||   ||||| ||| | | ||| |||||| |||||||  |||||||||||||||||||||||||||||    
T  15063618 ggaaagtatgcttcggttgtatgagacccgccagtgtcataattcttttttcctccggtcatttcaagaatcaacatgccataactg 15063532  T

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Target: scaffold0394 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 1816 - 2002
Alignment:
Q  24 caccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaatccagtct 123  Q
    ||||||||||||||| || | ||||||||||||||| ||||| |||| || |  ||||||||||  |||||||||||||||||||||| | ||||| ||     
T  1816 caccatagtaatcttctttagcatatcattttcttcttctgagattgccatactatttaaaagagaattaccttgctcaagatccttaaatatccaatcc 1915  T
Q  124 ggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataactg 210  Q
    | ||||||  |||| | || |   ||||| ||| | | ||| |||||| |||||||  |||||||||||||||||||||||||||||    
T  1916 gaaaagtatgtttcggctgcaagagacccgccagtgtcataattcttttttcctccggtcatttcaagaatcaacatgccataactg 2002  T

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