View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19947_low_29 (Length: 218)

Name: NF19947_low_29
Description: NF19947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19947_low_29
NF19947_low_29
[»] chr8 (4 HSPs)
chr8 (16-200)||(5672199-5672385)
chr8 (58-124)||(33822242-33822308)
chr8 (58-124)||(40439782-40439848)
chr8 (61-112)||(5374591-5374642)
[»] chr2 (3 HSPs)
chr2 (23-122)||(28694376-28694475)
chr2 (66-124)||(14384575-14384633)
chr2 (60-113)||(42064065-42064119)
[»] chr4 (3 HSPs)
chr4 (58-123)||(31063592-31063657)
chr4 (59-116)||(32324577-32324634)
chr4 (61-124)||(22508097-22508160)
[»] chr7 (2 HSPs)
chr7 (62-113)||(43542414-43542465)
chr7 (64-105)||(22597396-22597437)
[»] chr5 (2 HSPs)
chr5 (58-113)||(15711058-15711113)
chr5 (60-112)||(9227841-9227893)
[»] chr3 (3 HSPs)
chr3 (58-109)||(52551116-52551167)
chr3 (58-124)||(1214803-1214868)
chr3 (58-123)||(118738-118803)
[»] chr6 (1 HSPs)
chr6 (58-113)||(32109600-32109655)


Alignment Details
Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 5672199 - 5672385
Alignment:
Q  16 atgaacaattgcgaattattttacaaaaaagttatttgtttgtggtatggaaaacataaattaaaataactgaaaaaggataaagcaataaatagtaagg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5672199 atgaacaattgcgaattattttacaaaaaagttatttgtttgtggtatggaaaacataaattaaaataactgaaaaaagataaagcaataaatagtaagg 5672298  T
Q  116 gacataata--cnnnnnnnnnnngaaggaagtaagggacataatagaaaagtaagcattaattttttgaataagaaaagtaagcatt 200  Q
    |||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5672299 gacataatattttttttttttttgaaggaagtaagggacataatagaaaagtaagcattaattttttgaataagaaaggtaagcatt 5672385  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 33822308 - 33822242
Alignment:
Q  58 tggtatggaaaacataaattaaaataactgaaaaaggataaagcaataaatagtaagggacataata 124  Q
    |||||||||||||| ||||||||| || || |||| ||||||| ||||||||||||||| |||||||    
T  33822308 tggtatggaaaacaaaaattaaaagaattggaaaatgataaagtaataaatagtaagggtcataata 33822242  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 40439782 - 40439848
Alignment:
Q  58 tggtatggaaaacataaattaaaataactgaaaaaggataaagcaataaatagtaagggacataata 124  Q
    |||||||||||||||||||||||| || || |||| ||||||| ||||| ||||||||| |||||||    
T  40439782 tggtatggaaaacataaattaaaagaattggaaaaagataaagtaataagtagtaaggggcataata 40439848  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 5374642 - 5374591
Alignment:
Q  61 tatggaaaacataaattaaaataactgaaaaaggataaagcaataaatagta 112  Q
    ||||||||||||||| |||||||| ||||||| ||||||| |||||||||||    
T  5374642 tatggaaaacataaaataaaataattgaaaaaagataaagtaataaatagta 5374591  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 28694376 - 28694475
Alignment:
Q  23 attgcgaattattttacaaaaaagttatttgtttgtggtatggaaaacataaattaaaataactgaaaaaggataaagcaataaatagtaagggacataa 122  Q
    |||| ||||| |||||||||||  || ||| ||  ||||||| ||||||||||||||||||| |||||||  |||||| ||||||||||||||| |||||    
T  28694376 attgtgaattgttttacaaaaatattctttattaatggtatgaaaaacataaattaaaataattgaaaaaatataaagtaataaatagtaagggtcataa 28694475  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 14384575 - 14384633
Alignment:
Q  66 aaaacataaattaaaataactgaaaaaggataaagcaataaatagtaagggacataata 124  Q
    |||| ||||||||||| || ||||||| ||||||| |||||||||||| | ||||||||    
T  14384575 aaaaaataaattaaaagaattgaaaaaagataaagtaataaatagtaaagaacataata 14384633  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 42064119 - 42064065
Alignment:
Q  60 gtatggaaaacataaattaaaataactgaaaaaggat-aaagcaataaatagtaa 113  Q
    |||||||||||||||||||||| || | ||||||||| |||| ||||||||||||    
T  42064119 gtatggaaaacataaattaaaagaattaaaaaaggataaaagtaataaatagtaa 42064065  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 31063657 - 31063592
Alignment:
Q  58 tggtatggaaaacataaattaaaataactgaaaaaggataaagcaataaatagtaagggacataat 123  Q
    |||||||||||||||||||||||| ||||| ||||  ||||||||||||||||||| || ||||||    
T  31063657 tggtatggaaaacataaattaaaagaactggaaaaaaataaagcaataaatagtaaagggcataat 31063592  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 32324634 - 32324577
Alignment:
Q  59 ggtatggaaaacataaattaaaataactgaaaaaggataaagcaataaatagtaaggg 116  Q
    ||||||||||||||||||| |||||  ||||||| ||||||| |||||||||||||||    
T  32324634 ggtatggaaaacataaatttaaatacttgaaaaaagataaagtaataaatagtaaggg 32324577  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 22508160 - 22508097
Alignment:
Q  61 tatggaaaacataaattaaaataactgaaaaaggataaagcaataaatagtaagggacataata 124  Q
    ||||||||||||||| ||||| || || |||| ||| ||| ||||||||||||||| |||||||    
T  22508160 tatggaaaacataaaataaaagaattggaaaaagatcaagtaataaatagtaaggggcataata 22508097  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 43542465 - 43542414
Alignment:
Q  62 atggaaaacataaattaaaataactgaaaaaggataaagcaataaatagtaa 113  Q
    ||||||||| |||||||||| || ||||||||||||||| ||||||||||||    
T  43542465 atggaaaacgtaaattaaaagaattgaaaaaggataaagtaataaatagtaa 43542414  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 22597437 - 22597396
Alignment:
Q  64 ggaaaacataaattaaaataactgaaaaaggataaagcaata 105  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||    
T  22597437 ggaaaacataaattaaaataattgaaaaaagataaagtaata 22597396  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 15711058 - 15711113
Alignment:
Q  58 tggtatggaaaacataaattaaaataactgaaaaaggataaagcaataaatagtaa 113  Q
    |||||||||||||||||||||||| || || |||| ||||||| ||||||||||||    
T  15711058 tggtatggaaaacataaattaaaagaattggaaaaagataaagtaataaatagtaa 15711113  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 9227841 - 9227893
Alignment:
Q  60 gtatggaaaacataaattaaaataactgaaaaaggataaagcaataaatagta 112  Q
    ||||| |||||||||||||||| || ||||||| ||||||  |||||||||||    
T  9227841 gtatgaaaaacataaattaaaagaattgaaaaaagataaaataataaatagta 9227893  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 52551116 - 52551167
Alignment:
Q  58 tggtatggaaaacataaattaaaataactgaaaaaggataaagcaataaata 109  Q
    ||||||| |||||||||||||||||||||||| || ||||||| ||||||||    
T  52551116 tggtatgaaaaacataaattaaaataactgaacaaagataaagtaataaata 52551167  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 1214803 - 1214868
Alignment:
Q  58 tggtatggaaaacataaattaaaataactgaaaaaggataaagcaataaatagtaagggacataata 124  Q
    |||||||||||||||||||||||  |   ||||||| |||||| ||||||||||||||| |||||||    
T  1214803 tggtatggaaaacataaattaaagaattcgaaaaag-ataaagtaataaatagtaaggggcataata 1214868  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 118803 - 118738
Alignment:
Q  58 tggtatggaaaacataaattaaaataactgaaaaaggataaagcaataaatagtaagggacataat 123  Q
    |||||||| ||||||||||||||| || |  |||| ||||||| |||||||| ||| |||||||||    
T  118803 tggtatggtaaacataaattaaaagaatttgaaaaagataaagtaataaataataaaggacataat 118738  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 32109600 - 32109655
Alignment:
Q  58 tggtatggaaaacataaattaaaataactgaaaaaggataaagcaataaatagtaa 113  Q
    |||||||||||||||||||||||| || || |||| || |||| ||||||||||||    
T  32109600 tggtatggaaaacataaattaaaagaattggaaaaagacaaagtaataaatagtaa 32109655  T

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