View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19948_high_3 (Length: 400)
Name: NF19948_high_3
Description: NF19948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19948_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 23 - 383
Target Start/End: Original strand, 33287083 - 33287443
Alignment:
| Q |
23 |
atgatgttcattaaatgcatgtccaaagccctttttaattgccacttctttccatttgtcaaactctaccactgttttcgacgctgtagtaccatggcca |
122 |
Q |
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| T |
33287083 |
atgatgttcattaaatgcatgttcaaagccctttttaattgccacttctttccatttgtcaaactcggacactgttttcgacactgtagtaccatggcca |
33287182 |
T |
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| Q |
123 |
acataagtcacaacagaccctttggttacaattgcccaccctgtctcattcttgtacgaaagcaatttctcaacctgttgttttacactctctgttgtat |
222 |
Q |
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| T |
33287183 |
acagcaatcacaatagaacctttggttacaattgcccaccctgtctcattcttgtacgaaagcaatttctcaacctgttgttttacactgtctgttgtat |
33287282 |
T |
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| Q |
223 |
cattattattcatcttggtgagaaacaaactctccacctttgaccaaaatttgttaaccacatttgtctgttgagactccaagcttaacaactcaattga |
322 |
Q |
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| T |
33287283 |
cattattattcatcttggtgagaaacaaactctccacctttgtccaaaatttgttaaccacatttggcttttgagactccaagcttaacaactcaattga |
33287382 |
T |
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| Q |
323 |
agtatttgcctgcttaagatttgtatcatttgctagggcagtagcaaacttggtgaattct |
383 |
Q |
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| T |
33287383 |
agtctttgcctgcttaatatttgtatcatttgctagggcagtagcaaacttggtgaattct |
33287443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 46 - 339
Target Start/End: Complemental strand, 33141000 - 33140713
Alignment:
| Q |
46 |
caaagccctttttaattgccacttctttccatttgtcaaactctaccactgttttcgacgctgtagtaccatggccaacataagtcacaacagacccttt |
145 |
Q |
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| T |
33141000 |
caaagcctttattgatcgccacatctttccatttgtcaaactcggacactgtcttcaaaactgaagtcccatgaccaacagaagtcacaatagacccttt |
33140901 |
T |
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| Q |
146 |
ggttacaattgcccaccctgtctcattcttgtacgaaagcaatttctcaacctgttgttttacactctctgttgtatcattattattcatcttggtgaga |
245 |
Q |
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| T |
33140900 |
ggttacaattgcccacccagtctcattcttgtaagaaagcaatttctcaacctgttgtgttacagtgtttgtt------ttctcatgcatcttggtcaca |
33140807 |
T |
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| Q |
246 |
aacaaactctccacctttgaccaaaatttgttaaccacatttgtctgttgagactccaagcttaacaactcaattgaagtatttgcctgcttaa |
339 |
Q |
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| T |
33140806 |
aacaaactttctacctttttccagaagttgttaaccacatttggctgttgagactccaagcaaaacaggtcaattgaagtcttcgtctgcttaa |
33140713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 106 - 339
Target Start/End: Complemental strand, 33159560 - 33159333
Alignment:
| Q |
106 |
ctgtagtaccatggccaacataagtcacaacagaccctttggttacaattgcccaccctgtctcattcttgtacgaaagcaatttctcaacctgttgttt |
205 |
Q |
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| T |
33159560 |
ctgtagtcccatgaccaacagcaatcacaatagaacctttggttacaattgcccaccctgactcatttttgtaagaaagcaatttctcaacctgttgtgt |
33159461 |
T |
|
| Q |
206 |
tacactctctgttgtatcattattattcatcttggtgagaaacaaactctccacctttgaccaaaatttgttaaccacatttgtctgttgagactccaag |
305 |
Q |
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| T |
33159460 |
aacagagtttgtt------ttctcatgcatcttggtcacaaacaaactctctacctttttccaaaaggtgttaaccacattttgttgttgagactccaag |
33159367 |
T |
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| Q |
306 |
cttaacaactcaattgaagtatttgcctgcttaa |
339 |
Q |
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| T |
33159366 |
caaatcaactcaatggaagtgtttgtctgcttaa |
33159333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 106 - 339
Target Start/End: Complemental strand, 33182404 - 33182177
Alignment:
| Q |
106 |
ctgtagtaccatggccaacataagtcacaacagaccctttggttacaattgcccaccctgtctcattcttgtacgaaagcaatttctcaacctgttgttt |
205 |
Q |
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| T |
33182404 |
ctgtagtcccatgaccaacagcaatcacaatagaacctttggttacaattgcccaccctgactcatttttgtaagaaagcaatttctcaacctgttgtgt |
33182305 |
T |
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| Q |
206 |
tacactctctgttgtatcattattattcatcttggtgagaaacaaactctccacctttgaccaaaatttgttaaccacatttgtctgttgagactccaag |
305 |
Q |
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| T |
33182304 |
aacagagtttgtt------ttctcatgcatcttggtcacaaacaaactctctacctttttccaaaaggtgttaaccacattttgttgttgagactccaag |
33182211 |
T |
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| Q |
306 |
cttaacaactcaattgaagtatttgcctgcttaa |
339 |
Q |
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| T |
33182210 |
caaatcaactcaatggaagtgtttgtctgcttaa |
33182177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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