View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19948_high_5 (Length: 345)
Name: NF19948_high_5
Description: NF19948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19948_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 9 - 330
Target Start/End: Complemental strand, 25794272 - 25793951
Alignment:
| Q |
9 |
aagaacagtaatattgtgtgttgccaataatgctaaccccaaaactccaaccaaaattagcattgaagtgaagaagttgagctccaagatcattatctgc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25794272 |
aagaacagtaatattgtgtgttgccaataatgctaactccaaaactccaaccaaaattagcattgaagtgaagaagttgagctccaagatcattatctgc |
25794173 |
T |
|
| Q |
109 |
agatttgcaatgaagggttaaatccaaattaccttccaaattgtttttaacattcacacgtactccaaaaacattgtgcgctgatagtaatatcaacaca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
25794172 |
agatttgcaatgaagggttaaatccaaattaccttccaaattgtttttaacattcacacgtactccaaaaacattgtgcactgatagtaatatcagcaca |
25794073 |
T |
|
| Q |
209 |
catagcaatgggattttttgggtttgagacattactccttcaattaatctttcctttggaagtggataatcttcaagaacatgaaggtgaaaataattgc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25794072 |
catagcaatgggattttttgggtttgagacattactccttcaattaatctttcctttggaagtggataatcttcaagaacatgaaggtgaaaataattgc |
25793973 |
T |
|
| Q |
309 |
taaatgagtagcatatatttat |
330 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
25793972 |
taaatgagtagcatatatttat |
25793951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 25725197 - 25725286
Alignment:
| Q |
77 |
tgaagaagttgagctccaagatcattatctgcagatttgcaatgaagggttaaatccaaattaccttccaaattgtttttaacattcaca |
166 |
Q |
| |
|
|||||||| ||| |||||||||||| ||||||||||||||||||||||||||| ||||| ||| || ||||| ||| ||||||||||| |
|
|
| T |
25725197 |
tgaagaagatgaactccaagatcatcatctgcagatttgcaatgaagggttaagtccaagttatctgacaaatagttagtaacattcaca |
25725286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 25733605 - 25733694
Alignment:
| Q |
77 |
tgaagaagttgagctccaagatcattatctgcagatttgcaatgaagggttaaatccaaattaccttccaaattgtttttaacattcaca |
166 |
Q |
| |
|
|||||||| ||| |||||||||||| ||||||||||||||||||||||||||| ||||| ||| || ||||| ||| ||||||||||| |
|
|
| T |
25733605 |
tgaagaagatgaactccaagatcatcatctgcagatttgcaatgaagggttaagtccaagttatctgacaaatagttagtaacattcaca |
25733694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 26550958 - 26550887
Alignment:
| Q |
77 |
tgaagaagttgagctccaagatcattatctgcagatttgcaatgaagggttaaatccaaattaccttccaaa |
148 |
Q |
| |
|
|||||||| |||| ||||||||||| ||||||||| |||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
26550958 |
tgaagaagatgagatccaagatcatcatctgcagacttgcaatgaacggttaagtccaaattatcttccaaa |
26550887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 25228912 - 25228823
Alignment:
| Q |
77 |
tgaagaagttgagctccaagatcattatctgcagatttgcaatgaagggttaaatccaaattaccttccaaattgtttttaacattcaca |
166 |
Q |
| |
|
|||||||| ||| |||||||||||| |||||||||||||||||||| |||||||||| |||| ||||||||||| ||| ||||||| |
|
|
| T |
25228912 |
tgaagaagatgaactccaagatcatcatctgcagatttgcaatgaacagttaaatccagattattatccaaattgttaataagattcaca |
25228823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 26545517 - 26545446
Alignment:
| Q |
77 |
tgaagaagttgagctccaagatcattatctgcagatttgcaatgaagggttaaatccaaattaccttccaaa |
148 |
Q |
| |
|
|||||||| |||| ||||||||||| |||| |||| |||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
26545517 |
tgaagaagatgagatccaagatcatcatctccagacttgcaatgaacggttaagtccaaattatcttccaaa |
26545446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 25728574 - 25728663
Alignment:
| Q |
77 |
tgaagaagttgagctccaagatcattatctgcagatttgcaatgaagggttaaatccaaattaccttccaaattgtttttaacattcaca |
166 |
Q |
| |
|
|||||||| ||| |||||||||||| |||| ||||||||||||||||||||| ||||| ||| || ||||| ||| ||||||||||| |
|
|
| T |
25728574 |
tgaagaaggtgaactccaagatcatcatctttagatttgcaatgaagggttaagtccaagttatctaacaaatagttagtaacattcaca |
25728663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 25790484 - 25790447
Alignment:
| Q |
92 |
ccaagatcattatctgcagatttgcaatgaagggttaa |
129 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
25790484 |
ccaagatcatcatctgcagatttgcaatgaagagttaa |
25790447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 80 - 176
Target Start/End: Original strand, 30459738 - 30459834
Alignment:
| Q |
80 |
agaagttgagctccaagatcattatctgcagatttgcaatgaagggttaaatccaaattaccttccaaattgtttttaacattcacacgtactccaa |
176 |
Q |
| |
|
||||||||| |||||||||||| ||| |||||||||||||||||||| |||||||| |||||||| |||| |||||||||||||| ||||||| |
|
|
| T |
30459738 |
agaagttgaactccaagatcatcctctttggatttgcaatgaagggttaagtccaaatttccttccaacatgttgttaacattcacacgaactccaa |
30459834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University