View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19948_low_2 (Length: 512)
Name: NF19948_low_2
Description: NF19948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19948_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 16 - 496
Target Start/End: Complemental strand, 30057016 - 30056531
Alignment:
| Q |
16 |
gaaacttgaaccaacaacgtcgtcatt---taagtataaaaatatcactgatattcctgctgccgtagactggaggaaacgtggagcagttactccagtc |
112 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30057016 |
gaaacttgaaccaacaacgtcgtcattatttaagtataaaaatatcactgatattcctgctgccgtagactggaggaaacgtggagcagttactccagtc |
30056917 |
T |
|
| Q |
113 |
aagaatcaaagagaatgtggtaacataaaagacacnnnnnnnnnnnnnnnn---gtttcagtactctagtttaattcatctcatatatagttcataacta |
209 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30056916 |
aagaatcaaagagaatgtggtaacataaaagacactttttttttttttttttttgtttcagtactctagtttaattcatctcatatatagttcataacta |
30056817 |
T |
|
| Q |
210 |
tttatttgtccttaattattttaattttgtgatttgtaataataattacaggtagttgctgggcattttctgctgtgggtgcactggaaggtatcgaaca |
309 |
Q |
| |
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||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
30056816 |
tttatttgttcttaattattt-aattttgtaatttgtaacaataattacaggtagttgctgggcattttctgctgtgggtgcactagaaggtatccaaca |
30056718 |
T |
|
| Q |
310 |
aataactagtggaaatttagtgtccctttctgaacaagaacttgtggatcatgtcagaagtaattggacaaatggatgcaacggtggttatttgattgat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30056717 |
aataactagtggaaatttagtgtccctttctgaacaagaacttgtggatcgtgtcagaagtaattggacaaatggatgcaacggtggttatttgattgat |
30056618 |
T |
|
| Q |
410 |
gcttttgaattcgtcttagtaaacggtggaattgccacagaagcaagttatccgtacagaggagttaaaggaaataatagtaagaag |
496 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30056617 |
gcttttgaattcgtcttagaaaacggtggaattgccacagaagcaagttatccgtacagaggagttaaaggaaataatagtaagaag |
30056531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 48 - 485
Target Start/End: Original strand, 29746310 - 29746754
Alignment:
| Q |
48 |
ataaaaatatcactgatattcctgctgccgtagactggaggaaacgtggagcagttactccagtcaagaatcaaagagaatgtggtaacataaa-agaca |
146 |
Q |
| |
|
||||||||||||||||||||||| | |||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
29746310 |
ataaaaatatcactgatattcctaccaacgtatactggaggaaacgtagagcagttactccagtcaagaatcaaagaggatgtggtaacataaaaagaca |
29746409 |
T |
|
| Q |
147 |
cnnnnnnnnnnnnnnnn------gtttcagtactctagtttaattcatctcatatat-agttcataactatttatttgtccttaattattttaattttgt |
239 |
Q |
| |
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| ||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||| | ||||||||||| |
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| T |
29746410 |
cttttttcttcttcttgttttaagtttcagtactctagtttaattcatctcatagcttagttcataa----ttatttgtccttaaattatttaattttgt |
29746505 |
T |
|
| Q |
240 |
gatttgtaataataattacaggtagttgc-----tgggcattttctgctgtgggtgcactggaaggtatcgaacaaataactagtggaaatttagtgtcc |
334 |
Q |
| |
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|||| |||||| ||| |||||||||| | |||||||||||| | |||| |||| | ||||||||| |||||||||| |||||||||||||| ||| |
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| T |
29746506 |
-attt-taataacaataacaggtagttacgttgttgggcattttctacggtggctgcaatagaaggtatccaacaaataaccagtggaaatttagtctcc |
29746603 |
T |
|
| Q |
335 |
ctttctgaacaagaacttgtggatcatgtcagaagtaattggacaaatggatgcaacggtggttatttgattgatgcttttgaattcgtcttagtaaacg |
434 |
Q |
| |
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|||| || ||| ||||||||||| |||| |||||||||||| |||||||| || |||||| || ||||||||||||| ||||| |||| ||||| |
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| T |
29746604 |
ttttcagagcaacaacttgtggattgtgtcgcaagtaattggaccaatggatgtaatggtggtaataagattgatgcttttaaattcaatttagaaaacg |
29746703 |
T |
|
| Q |
435 |
gtggaattgccacagaagcaagttatccgtacagaggagttaaaggaaata |
485 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||| |
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|
| T |
29746704 |
gtggaattgccacagaagcaagttatccatacaagggagttaaaggaaata |
29746754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 48 - 478
Target Start/End: Complemental strand, 29606858 - 29606417
Alignment:
| Q |
48 |
ataaaaatatcactgatattcctgctgccgtagactggaggaaacgtggagcagttactccagtcaagaatcaaagagaatgtggtaacataaa-agaca |
146 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
29606858 |
ataaaaatatcactgatattcctaccgccgtagactggaggaaacgtagagcagttactccagtcaagaatcaaagaggatgtggtaacataaaaagaca |
29606759 |
T |
|
| Q |
147 |
cnnnnnnnnnnnnnnnn------gtttcagtactctagtttaattcatctcatatat-agttcataactatttatttgtccttaattattttaattttgt |
239 |
Q |
| |
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| |||||||||||| |||||||||||||||||| | ||||||||| |||||||||||||||||||| |||||||| |
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| T |
29606758 |
cttctttcttcttcttgttttaagtttcagtactccagtttaattcatctcatagcttagttcataa----ttatttgtccttaattattt-aattttgt |
29606664 |
T |
|
| Q |
240 |
gatttgtaataataattacaggtagttgc-----tgggcattttctgctgtgggtgcactggaa-----ggtatcgaacaaataactagtggaaatttag |
329 |
Q |
| |
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|||| |||||| ||| |||||||||| | |||||||||||| |||| |||| | ||| |||||| ||||||||| ||||||||||||| |
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| T |
29606663 |
-attt-taataacaataacaggtagttacgttgttgggcattttctatggtggctgcaatagaatagaaggtatccaacaaataatcagtggaaatttag |
29606566 |
T |
|
| Q |
330 |
tgtccctttctgaacaagaacttgtggatcatgtcagaagtaattggacaaatggatgcaacggtggttatttgattgatgcttttgaattcgtcttagt |
429 |
Q |
| |
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| ||| |||| || ||| ||||||||||| ||||| |||||||||||| |||||||| || |||||| || ||||||||||||| ||||| | |||| |
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| T |
29606565 |
tctccttttcagagcaacaacttgtggattgtgtcacaagtaattggaccaatggatgtaatggtggtaataagattgatgcttttaaattcattttaga |
29606466 |
T |
|
| Q |
430 |
aaacggtggaattgccacagaagcaagttatccgtacagaggagttaaa |
478 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| ||||||||| |
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|
| T |
29606465 |
aaacggtggaattgccacagaagcaagttatccatacaagggagttaaa |
29606417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 29733913 - 29733817
Alignment:
| Q |
39 |
catttaagtataaaaatatcactgatattcctgctgccgtagactggaggaaacgtggagcagttactccagtcaagaatcaaagagaatgtggtaa |
135 |
Q |
| |
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||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| |
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| T |
29733913 |
catttaagtatgaaaatgtcactgatattcctgccaccgtagactggaggaaacgtggagcagttactccaatcaagaatcaaggaaaatgtggtaa |
29733817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 240 - 467
Target Start/End: Complemental strand, 29733723 - 29733496
Alignment:
| Q |
240 |
gatttgtaataataattacaggtagttgctgggcattttctgctgtgggtgcactggaaggtatcgaacaaataactagtggaaatttagtgtccctttc |
339 |
Q |
| |
|
||||||||| || ||| ||||||||||||||||||||||||||||||| ||| | ||||||||| || |||||||||||||||||||||| |||||||| |
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|
| T |
29733723 |
gatttgtaacaacaataacaggtagttgctgggcattttctgctgtggctgcgatagaaggtatccaaaaaataactagtggaaatttagtttccctttc |
29733624 |
T |
|
| Q |
340 |
tgaacaagaacttgtggatcatgtcagaagtaattggacaaatggatgcaacggtggttatttgattgatgcttttgaattcgtcttagtaaacggtgga |
439 |
Q |
| |
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|| || ||||||||||| || |||||| | |||| || ||||| | ||| || ||||| |||||||| ||||| | |||| ||| |||||| |
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| T |
29733623 |
agagcagcaacttgtggattgtgatagaagtggtcggactaaaggatgtgataacggtaatatgattaatgcttttaaattcattttagaaaatggtgga |
29733524 |
T |
|
| Q |
440 |
attgccacagaagcaagttatccgtaca |
467 |
Q |
| |
|
||||| |||||||||| |||||| |||| |
|
|
| T |
29733523 |
attgcgacagaagcaaattatccataca |
29733496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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