View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19949_high_10 (Length: 242)

Name: NF19949_high_10
Description: NF19949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19949_high_10
NF19949_high_10
[»] chr1 (2 HSPs)
chr1 (5-117)||(20986785-20986897)
chr1 (9-117)||(50729654-50729762)
[»] chr7 (2 HSPs)
chr7 (5-118)||(20348575-20348688)
chr7 (1-117)||(44433023-44433139)
[»] chr4 (1 HSPs)
chr4 (116-164)||(32509422-32509470)
[»] chr3 (2 HSPs)
chr3 (5-89)||(34434263-34434347)
chr3 (31-80)||(20857593-20857642)
[»] chr5 (1 HSPs)
chr5 (2-54)||(4421435-4421487)


Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 20986785 - 20986897
Alignment:
Q  5 ttcgaccaccaagtctgcgtatcgtgcataaaattgacattattagccttaagccaccacaaagaatagtatttaatcttatctaataaaggatctatgg 104  Q
    ||||||||||||| || |||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  20986785 ttcgaccaccaagcctacgtaccgtgcacaaaattaacattattagccttaagccaccacaaagaatagtatttaatcttatctaataatcgatctatgg 20986884  T
Q  105 tggtatggacatt 117  Q
    |||||||||||||    
T  20986885 tggtatggacatt 20986897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 50729654 - 50729762
Alignment:
Q  9 accaccaagtctgcgtatcgtgcataaaattgacattattagccttaagccaccacaaagaatagtatttaatcttatctaataaaggatctatggtggt 108  Q
    ||||||| |||| |||| |||||| |||| || |||||| |||||||||||||||||| |||| ||||||||  || ||||||||  | |||||||||||    
T  50729654 accaccacgtctacgtaccgtgcacaaaaatggcattatcagccttaagccaccacaacgaatggtatttaactttttctaataattgttctatggtggt 50729753  T
Q  109 atggacatt 117  Q
    |||||||||    
T  50729754 atggacatt 50729762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 20348575 - 20348688
Alignment:
Q  5 ttcgaccaccaagtctgcgtatcgtgcataaaattgacattattagccttaagccaccacaaagaatagtatttaatcttatctaataaaggatctatgg 104  Q
    ||||||||||||| ||||||| |||||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||    
T  20348575 ttcgaccaccaagcctgcgtaccgtgcacaaaatgggcattattagccttaagccaccacaaagaatagtatttgatcttatctaataatcgatctatgg 20348674  T
Q  105 tggtatggacattt 118  Q
    ||||||||||||||    
T  20348675 tggtatggacattt 20348688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 44433023 - 44433139
Alignment:
Q  1 aggattcgaccaccaagtctgcgtatcgtgcataaaattgacattattagccttaagccaccacaaagaatagtatttaatcttatctaataaaggatct 100  Q
    ||||||||||||||||||||||||| | |||| |||| || ||||||||||||||||||| ||||| |||| |||||||||||| ||||||||  | | |    
T  44433023 aggattcgaccaccaagtctgcgtaccatgcacaaaaatggcattattagccttaagccatcacaatgaatggtatttaatcttttctaataattgttat 44433122  T
Q  101 atggtggtatggacatt 117  Q
    |||||||||||||||||    
T  44433123 atggtggtatggacatt 44433139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 32509470 - 32509422
Alignment:
Q  116 tttcttcttccctttaattaacacagatatcctaacagccacaaccatg 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32509470 tttcttcttccctttaattaacacagatatcctaacagccacaaccatg 32509422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 34434347 - 34434263
Alignment:
Q  5 ttcgaccaccaagtctgcgtatcgtgcataaaattgacattattagccttaagccaccacaaagaatagtatttaatcttatcta 89  Q
    |||||||||||  |||| || ||||||| ||| ||||||||||||||||||||||||||||| ||||  ||||||| ||| ||||    
T  34434347 ttcgaccaccacatctgagtgtcgtgcacaaacttgacattattagccttaagccaccacaacgaatgatatttaaccttttcta 34434263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 20857593 - 20857642
Alignment:
Q  31 cataaaattgacattattagccttaagccaccacaaagaatagtatttaa 80  Q
    |||||||||| | ||||||||||| |||||||||||||| | ||||||||    
T  20857593 cataaaattggccttattagccttgagccaccacaaagagtggtatttaa 20857642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 4421435 - 4421487
Alignment:
Q  2 ggattcgaccaccaagtctgcgtatcgtgcataaaattgacattattagcctt 54  Q
    ||||||||||||||  |||||||| | |||||||||||| |||||||||||||    
T  4421435 ggattcgaccaccacatctgcgtaccatgcataaaattggcattattagcctt 4421487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University