View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19949_high_2 (Length: 396)

Name: NF19949_high_2
Description: NF19949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19949_high_2
NF19949_high_2
[»] chr1 (16 HSPs)
chr1 (13-380)||(27215337-27215704)
chr1 (84-380)||(27221299-27221595)
chr1 (84-282)||(27443248-27443443)
chr1 (293-380)||(27207966-27208053)
chr1 (293-378)||(27433048-27433133)
chr1 (284-380)||(27443468-27443564)
chr1 (122-282)||(27208086-27208246)
chr1 (84-282)||(27433166-27433367)
chr1 (293-360)||(27410236-27410303)
chr1 (295-360)||(27415756-27415821)
chr1 (297-378)||(27455196-27455277)
chr1 (306-380)||(27389260-27389334)
chr1 (191-282)||(27455314-27455409)
chr1 (13-64)||(27443191-27443241)
chr1 (143-185)||(27390262-27390304)
chr1 (143-185)||(27410497-27410539)


Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 380
Target Start/End: Complemental strand, 27215704 - 27215337
Alignment:
Q  13 agcagagagcaacttcatcaaatcaccttcacacaacaaactacaatcgaaaaactctcactaattaatatatattcacaagcctgcaaaacaagattaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27215704 agcagagagcaacttcatcaaatcaccttcacacaacaaactacaatcgaaaaactctcactaattaatatatattcacaagcctgcaaaacaagattaa 27215605  T
Q  113 tcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacggtacgtacatatatcaatacataactacat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27215604 tcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacggtacgtacatatatcaatacataactacat 27215505  T
Q  213 taattttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttaataaattcattcgtatttgtatatgcagtggttggaggagc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  27215504 taattttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttactaaattcatttgtatttgtatatgcagtggttggaggagc 27215405  T
Q  313 taaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggagaccaaaaac 380  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27215404 taaggtgacgttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaac 27215337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 84 - 380
Target Start/End: Complemental strand, 27221595 - 27221299
Alignment:
Q  84 atattcacaagcctgcaaaacaagattaatcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacgg 183  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||    
T  27221595 atattcacaagcctgcaaaacaagattcatcaaaagccatatccaaaatgacaagcacccgcgttgctctatgccttagttttgcattcctcttctatgg 27221496  T
Q  184 tacgtacatatatcaatacataactacattaattttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttaataaattcattc 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  27221495 tacgtacatatatcaatacataactacattaattttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttattaaattcattt 27221396  T
Q  284 gtatttgtatatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggagaccaaaaac 380  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27221395 gtatttgtatatgcagtggttggaggagctaaggtgactttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaac 27221299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 84 - 282
Target Start/End: Original strand, 27443248 - 27443443
Alignment:
Q  84 atattcacaagcctgcaaaacaagattaatcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacgg 183  Q
    ||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||    
T  27443248 atattcacaagcctgcaaaacaagattcatcaa--gccatatccaaaatgacaagcactcgtgttgctctatgccttagttttgcattcctcttctatgg 27443345  T
Q  184 tacgtacatatatcaatacataactacattaatt---ttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttaataaattca 280  Q
    ||     |||||||| |||  |||||||||||||   |||||||| ||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||    
T  27443346 tat----atatatcactactcaactacattaattaatttccatatgattaatcaattcatttagctaagtaaatttttcttcttgcgcttaataaattca 27443441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 293 - 380
Target Start/End: Complemental strand, 27208053 - 27207966
Alignment:
Q  293 tatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggagaccaaaaac 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27208053 tatgcagtggttggaggagctaaggtgacattcacaaataggtgtgcatacactgtatggccaggaacgttaactggagaccaaaaac 27207966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 293 - 378
Target Start/End: Complemental strand, 27433133 - 27433048
Alignment:
Q  293 tatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggagaccaaaa 378  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27433133 tatgcagcggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccgggaacgttaactggagaccaaaa 27433048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 284 - 380
Target Start/End: Original strand, 27443468 - 27443564
Alignment:
Q  284 gtatttgtatatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggagaccaaaaac 380  Q
    |||||| | |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27443468 gtatttctttatgcagttgttggaggagctaaggtgacgttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaac 27443564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 122 - 282
Target Start/End: Complemental strand, 27208246 - 27208086
Alignment:
Q  122 atatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacggtacgtacatatatcaatacataactacattaattttcc 221  Q
    |||||||||||||   ||| |||||||||| | ||| |||| ||||||||||||||||| ||||     |||||||| |||  |||||||||||||||||    
T  27208246 atatccaaaatgaagtgcaaccgtgttgctttatgctttagctttgcattcctcttctatggtat----atatatcagtactcaactacattaattttcc 27208151  T
Q  222 atataattaatc----aattcacttagctaagttaatttctcttcatgcgcttaataaattcatt 282  Q
    ||||| ||||||    |||||| |||||| |||| ||||||||||||| | ||||||||||||||    
T  27208150 atatagttaatccattaattcatttagcttagtttatttctcttcatgtggttaataaattcatt 27208086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 84 - 282
Target Start/End: Complemental strand, 27433367 - 27433166
Alignment:
Q  84 atattcacaagcctgcaaaacaagattaatcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacgg 183  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||||||||  | ||||| ||||||| | ||| |||| || |||||||||||||| ||    
T  27433367 atattcacaagcctgcaaaacaagattaatc--aagtcatatccaaaatgaagaacacccatgttgctttatgctttagcttggcattcctcttctatgg 27433270  T
Q  184 tacgtacatatatcaata--cat--aactacattaattttccata----taattaatcaattcacttagctaagttaatttctcttcatgcgcttaataa 275  Q
    ||   | |||||||| ||  |||  ||||||||||||||||||||    |||| ||| |||||| |||||| | || ||| ||||||||| | |||||||    
T  27433269 ta---atatatatcagtactcattcaactacattaattttccatatagttaataaattaattcatttagcttattttattcctcttcatgtggttaataa 27433173  T
Q  276 attcatt 282  Q
    |||||||    
T  27433172 attcatt 27433166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 293 - 360
Target Start/End: Complemental strand, 27410303 - 27410236
Alignment:
Q  293 tatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaac 360  Q
    |||||||||||||||||||| |||||||||||||| ||||| |||| ||| |||||||||||||||||    
T  27410303 tatgcagtggttggaggagccaaggtgacattcacgaatagatgtggatatactgtatggccaggaac 27410236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 360
Target Start/End: Original strand, 27415756 - 27415821
Alignment:
Q  295 tgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaac 360  Q
    ||||| |||||||||||| |||||||||||||| ||||| |||| |||||||||||||||||||||    
T  27415756 tgcagaggttggaggagccaaggtgacattcacgaatagatgtgtatacactgtatggccaggaac 27415821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 378
Target Start/End: Complemental strand, 27455277 - 27455196
Alignment:
Q  297 cagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggagaccaaaa 378  Q
    |||| |||||||||||||||||||||||||| |||| ||||||||| | |||||| | || |||||||||| ||||| ||||    
T  27455277 cagtagttggaggagctaaggtgacattcaccaataagtgtgaataaattgtatgactagaaacgttaactagagacaaaaa 27455196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 380
Target Start/End: Complemental strand, 27389334 - 27389260
Alignment:
Q  306 gaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggagaccaaaaac 380  Q
    ||||||| | ||| |||||||| ||||| |||| |||||| |||||||||||||| ||||| |||||||||||||    
T  27389334 gaggagccacggtaacattcacgaatagatgtggatacaccgtatggccaggaaccttaaccggagaccaaaaac 27389260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 191 - 282
Target Start/End: Complemental strand, 27455409 - 27455314
Alignment:
Q  191 atatatcaatacataactacattaattttccatat----aattaatcaattcacttagctaagttaatttctcttcatgcgcttaataaattcatt 282  Q
    ||||||||||||  |||||||||||||||||||||    ||| ||| |||||| |||||| |||| ||| ||||||||| | ||||||||||||||    
T  27455409 atatatcaatacccaactacattaattttccatatagtaaatcaattaattcatttagcttagtttattgctcttcatgtggttaataaattcatt 27455314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 27443191 - 27443241
Alignment:
Q  13 agcagagagcaacttcatcaaatcaccttcacacaacaaactacaatcgaaa 64  Q
    |||||||| |||||||||||| ||||||||| ||| ||||||||||||||||    
T  27443191 agcagagaacaacttcatcaa-tcaccttcaaacagcaaactacaatcgaaa 27443241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 27390304 - 27390262
Alignment:
Q  143 cgtgttgctctgtgccttagttttgcattcctcttctacggta 185  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||    
T  27390304 cgtgttgctctctgccttagctttgcattcctcttctatggta 27390262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 27410539 - 27410497
Alignment:
Q  143 cgtgttgctctgtgccttagttttgcattcctcttctacggta 185  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||    
T  27410539 cgtgttgctctctgccttagctttgcattcctcttctatggta 27410497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University