View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19949_low_1 (Length: 426)

Name: NF19949_low_1
Description: NF19949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19949_low_1
NF19949_low_1
[»] chr1 (16 HSPs)
chr1 (13-423)||(27215294-27215704)
chr1 (84-423)||(27221256-27221595)
chr1 (284-423)||(27443468-27443607)
chr1 (84-282)||(27443248-27443443)
chr1 (293-419)||(27207927-27208053)
chr1 (293-419)||(27433007-27433133)
chr1 (306-419)||(27389221-27389334)
chr1 (297-420)||(27455155-27455277)
chr1 (122-282)||(27208086-27208246)
chr1 (84-282)||(27433166-27433367)
chr1 (293-412)||(27410184-27410303)
chr1 (295-360)||(27415756-27415821)
chr1 (191-282)||(27455314-27455409)
chr1 (13-64)||(27443191-27443241)
chr1 (143-185)||(27390262-27390304)
chr1 (143-185)||(27410497-27410539)


Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 13 - 423
Target Start/End: Complemental strand, 27215704 - 27215294
Alignment:
Q  13 agcagagagcaacttcatcaaatcaccttcacacaacaaactacaatcgaaaaactctcactaattaatatatattcacaagcctgcaaaacaagattaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27215704 agcagagagcaacttcatcaaatcaccttcacacaacaaactacaatcgaaaaactctcactaattaatatatattcacaagcctgcaaaacaagattaa 27215605  T
Q  113 tcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacggtacgtacatatatcaatacataactacat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27215604 tcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacggtacgtacatatatcaatacataactacat 27215505  T
Q  213 taattttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttaataaattcattcgtatttgtatatgcagtggttggaggagc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  27215504 taattttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttactaaattcatttgtatttgtatatgcagtggttggaggagc 27215405  T
Q  313 taaggtgacattcacaaataggtgtgaatacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaacgacaggtttcgagttggga 412  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27215404 taaggtgacgttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaacctcagctatcaacgacaggtttcgagttggga 27215305  T
Q  413 tctggagttac 423  Q
    |||||||||||    
T  27215304 tctggagttac 27215294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 84 - 423
Target Start/End: Complemental strand, 27221595 - 27221256
Alignment:
Q  84 atattcacaagcctgcaaaacaagattaatcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacgg 183  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||    
T  27221595 atattcacaagcctgcaaaacaagattcatcaaaagccatatccaaaatgacaagcacccgcgttgctctatgccttagttttgcattcctcttctatgg 27221496  T
Q  184 tacgtacatatatcaatacataactacattaattttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttaataaattcattc 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  27221495 tacgtacatatatcaatacataactacattaattttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttattaaattcattt 27221396  T
Q  284 gtatttgtatatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacattaactggagaccaaaaacctc 383  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  27221395 gtatttgtatatgcagtggttggaggagctaaggtgactttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaacctc 27221296  T
Q  384 agctatcaacgacaggtttcgagttgggatctggagttac 423  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27221295 agctatcaacgacaggtttcgagttgggatctggagttac 27221256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 284 - 423
Target Start/End: Original strand, 27443468 - 27443607
Alignment:
Q  284 gtatttgtatatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacattaactggagaccaaaaacctc 383  Q
    |||||| | |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  27443468 gtatttctttatgcagttgttggaggagctaaggtgacgttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaacctc 27443567  T
Q  384 agctatcaacgacaggtttcgagttgggatctggagttac 423  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27443568 agctatcaacgacaggtttcgagttgggatctggagttac 27443607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 84 - 282
Target Start/End: Original strand, 27443248 - 27443443
Alignment:
Q  84 atattcacaagcctgcaaaacaagattaatcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacgg 183  Q
    ||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||    
T  27443248 atattcacaagcctgcaaaacaagattcatcaa--gccatatccaaaatgacaagcactcgtgttgctctatgccttagttttgcattcctcttctatgg 27443345  T
Q  184 tacgtacatatatcaatacataactacattaatt---ttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttaataaattca 280  Q
    ||     |||||||| |||  |||||||||||||   |||||||| ||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||    
T  27443346 tat----atatatcactactcaactacattaattaatttccatatgattaatcaattcatttagctaagtaaatttttcttcttgcgcttaataaattca 27443441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 293 - 419
Target Start/End: Complemental strand, 27208053 - 27207927
Alignment:
Q  293 tatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaa 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  27208053 tatgcagtggttggaggagctaaggtgacattcacaaataggtgtgcatacactgtatggccaggaacgttaactggagaccaaaaacctcagctatcga 27207954  T
Q  393 cgacaggtttcgagttgggatctggag 419  Q
    | || ||||| ||||| ||| ||||||    
T  27207953 caacgggttttgagttaggacctggag 27207927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 293 - 419
Target Start/End: Complemental strand, 27433133 - 27433007
Alignment:
Q  293 tatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaa 392  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  27433133 tatgcagcggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccgggaacgttaactggagaccaaaagcctcagctatcaa 27433034  T
Q  393 cgacaggtttcgagttgggatctggag 419  Q
    | || ||||| ||||| ||| ||||||    
T  27433033 caacgggttttgagttaggacctggag 27433007  T

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Target: chr1; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 306 - 419
Target Start/End: Complemental strand, 27389334 - 27389221
Alignment:
Q  306 gaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaacgacaggtttcga 405  Q
    ||||||| | ||| |||||||| ||||| |||| |||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||    
T  27389334 gaggagccacggtaacattcacgaatagatgtggatacaccgtatggccaggaaccttaaccggagaccaaaaacctcagctatcaacaacaggtttcga 27389235  T
Q  406 gttgggatctggag 419  Q
    ||| ||| ||||||    
T  27389234 gttaggacctggag 27389221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 420
Target Start/End: Complemental strand, 27455277 - 27455155
Alignment:
Q  297 cagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaacgac 396  Q
    |||| |||||||||||||||||||||||||| |||| ||||||||| | |||||| | || ||| |||||| |||| |||||||||||||||| ||||||    
T  27455277 cagtagttggaggagctaaggtgacattcaccaataagtgtgaataaattgtatgactagaaacgttaactagaga-caaaaacctcagctatgaacgac 27455179  T
Q  397 aggtttcgagttgggatctggagt 420  Q
    | ||||||| ||||||||| ||||    
T  27455178 aagtttcgacttgggatctagagt 27455155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 122 - 282
Target Start/End: Complemental strand, 27208246 - 27208086
Alignment:
Q  122 atatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacggtacgtacatatatcaatacataactacattaattttcc 221  Q
    |||||||||||||   ||| |||||||||| | ||| |||| ||||||||||||||||| ||||     |||||||| |||  |||||||||||||||||    
T  27208246 atatccaaaatgaagtgcaaccgtgttgctttatgctttagctttgcattcctcttctatggtat----atatatcagtactcaactacattaattttcc 27208151  T
Q  222 atataattaatc----aattcacttagctaagttaatttctcttcatgcgcttaataaattcatt 282  Q
    ||||| ||||||    |||||| |||||| |||| ||||||||||||| | ||||||||||||||    
T  27208150 atatagttaatccattaattcatttagcttagtttatttctcttcatgtggttaataaattcatt 27208086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 84 - 282
Target Start/End: Complemental strand, 27433367 - 27433166
Alignment:
Q  84 atattcacaagcctgcaaaacaagattaatcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacgg 183  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||||||||  | ||||| ||||||| | ||| |||| || |||||||||||||| ||    
T  27433367 atattcacaagcctgcaaaacaagattaatc--aagtcatatccaaaatgaagaacacccatgttgctttatgctttagcttggcattcctcttctatgg 27433270  T
Q  184 tacgtacatatatcaata--cat--aactacattaattttccata----taattaatcaattcacttagctaagttaatttctcttcatgcgcttaataa 275  Q
    ||   | |||||||| ||  |||  ||||||||||||||||||||    |||| ||| |||||| |||||| | || ||| ||||||||| | |||||||    
T  27433269 ta---atatatatcagtactcattcaactacattaattttccatatagttaataaattaattcatttagcttattttattcctcttcatgtggttaataa 27433173  T
Q  276 attcatt 282  Q
    |||||||    
T  27433172 attcatt 27433166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 293 - 412
Target Start/End: Complemental strand, 27410303 - 27410184
Alignment:
Q  293 tatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaa 392  Q
    |||||||||||||||||||| |||||||||||||| ||||| |||| ||| ||||||||||||||||| || |||  ||  ||||  |||||  ||||||    
T  27410303 tatgcagtggttggaggagccaaggtgacattcacgaatagatgtggatatactgtatggccaggaacctttactacagctcaaacccctcaattatcaa 27410204  T
Q  393 cgacaggtttcgagttggga 412  Q
    | |||||||| |||||||||    
T  27410203 caacaggttttgagttggga 27410184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 360
Target Start/End: Original strand, 27415756 - 27415821
Alignment:
Q  295 tgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaac 360  Q
    ||||| |||||||||||| |||||||||||||| ||||| |||| |||||||||||||||||||||    
T  27415756 tgcagaggttggaggagccaaggtgacattcacgaatagatgtgtatacactgtatggccaggaac 27415821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 191 - 282
Target Start/End: Complemental strand, 27455409 - 27455314
Alignment:
Q  191 atatatcaatacataactacattaattttccatat----aattaatcaattcacttagctaagttaatttctcttcatgcgcttaataaattcatt 282  Q
    ||||||||||||  |||||||||||||||||||||    ||| ||| |||||| |||||| |||| ||| ||||||||| | ||||||||||||||    
T  27455409 atatatcaatacccaactacattaattttccatatagtaaatcaattaattcatttagcttagtttattgctcttcatgtggttaataaattcatt 27455314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 27443191 - 27443241
Alignment:
Q  13 agcagagagcaacttcatcaaatcaccttcacacaacaaactacaatcgaaa 64  Q
    |||||||| |||||||||||| ||||||||| ||| ||||||||||||||||    
T  27443191 agcagagaacaacttcatcaa-tcaccttcaaacagcaaactacaatcgaaa 27443241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 27390304 - 27390262
Alignment:
Q  143 cgtgttgctctgtgccttagttttgcattcctcttctacggta 185  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||    
T  27390304 cgtgttgctctctgccttagctttgcattcctcttctatggta 27390262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 27410539 - 27410497
Alignment:
Q  143 cgtgttgctctgtgccttagttttgcattcctcttctacggta 185  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||    
T  27410539 cgtgttgctctctgccttagctttgcattcctcttctatggta 27410497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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