View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19949_low_11 (Length: 211)
Name: NF19949_low_11
Description: NF19949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19949_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 31389393 - 31389216
Alignment:
| Q |
18 |
tcatcagggacgtgatctgaaggtaaaagtaaagatactcagataatgaattccttttgaaggctttggcttacaatggttatttgtgtatattgtctca |
117 |
Q |
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| T |
31389393 |
tcatcagggacgtgatctgaaggtaaaagtaaagatactaagataatgaattccttttgaaggctttggcttacaatggttatttgtgtatattgtctca |
31389294 |
T |
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| Q |
118 |
ataatttcgccatctattgttctcacaactcttttcttcacaacacaattatgccacatatatttataatagcttctctg |
197 |
Q |
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| T |
31389293 |
ataatttcgccatctattgttctcacaactcttttcttcacaacacaattataccac--atatttataatagcttctctg |
31389216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 31462068 - 31461885
Alignment:
| Q |
18 |
tcatcagggacgtgatctgaaggtaaaagtaaagatactcagataatgaattcctttt----gaaggctttggcttacaatggttatttgtgtatattgt |
113 |
Q |
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| T |
31462068 |
tcatcagggacgtgatctgaaggtaaaagtaaagatactcagataatgaattccttttctttgaatttttaggcttacaatgattatgtgtgtatattgt |
31461969 |
T |
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| Q |
114 |
ctcaataatttcgccatctattgttctcacaactcttttcttcacaacacaattatgccacatatatttataatagcttctctg |
197 |
Q |
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| T |
31461968 |
cacaataatctcttcatcaattgttctcacaactctttccttcacaacaaaattaggctacatacatttattatagcttctctg |
31461885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 31496588 - 31496498
Alignment:
| Q |
104 |
tgtatattgtctcaataatttcgccatctattgttctcacaactcttttcttcacaacacaattatgccacatatatttataatagcttct |
194 |
Q |
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| T |
31496588 |
tgtatagtgtctcaataacttctccatctattgttctctcaacctttttcttcacaaaacaattaggccatgtacatttataatagcttct |
31496498 |
T |
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