View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19949_low_3 (Length: 375)
Name: NF19949_low_3
Description: NF19949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19949_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 357
Target Start/End: Complemental strand, 37304804 - 37304458
Alignment:
| Q |
12 |
aagcaaaggaaggaactaagcagagagttagggttagagccattgcaagtgaagttttggtttcagaacaaacgtactcaaatgaaggtatttcatttaa |
111 |
Q |
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| T |
37304804 |
aagcaaaggaaggaactaagcagagagttagggttagagccattgcaagtgaagttttggtttcagaacaaacgtactcaaatgaaggtatttcatttaa |
37304705 |
T |
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| Q |
112 |
ttaatttggaggnnnnnnnnnnnnnnnnnnnnnnggttgaaaaatgaagagtacttagaatgatttatannnnnnnnnnn-gtttgcagactcaacagga |
210 |
Q |
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| T |
37304704 |
ttaatttggaggattttttatttattttatttttggttgaaaaatgaagagtacttagaatgatttatattttttttttttgtttgcagactcaacagga |
37304605 |
T |
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| Q |
211 |
gaggcatgagaatacttcacttagaactgaaaatgagaaacttcgcgctgataacatgaggtttagagaagctctaagtaatgcttcttgtcctaattgt |
310 |
Q |
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| T |
37304604 |
gaggcatgagaatacttcacttagaactgaaaatgagaaacttcgcgctgataacatgaggtttagagaagctctaagtaatgcttcttgtcctaattgt |
37304505 |
T |
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| Q |
311 |
ggtggaccaactgctatcggagaaatgtcgtttgatgaacatcactt |
357 |
Q |
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| T |
37304504 |
ggtggaccaactgctatcggagaaatgtcgtttgatgaacatcactt |
37304458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 257 - 354
Target Start/End: Original strand, 16825423 - 16825520
Alignment:
| Q |
257 |
gctgataacatgaggtttagagaagctctaagtaatgcttcttgtcctaattgtggtggaccaactgctatcggagaaatgtcgtttgatgaacatca |
354 |
Q |
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| T |
16825423 |
gctgataacatgaggtatagagaagctcttagcaatgcttcatgtcctaattgtggtggtccaacagctataggtgaaatgtcatttgatgaacatca |
16825520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 16825182 - 16825272
Alignment:
| Q |
12 |
aagcaaaggaaggaactaagcagagagttagggttagagccattgcaagtgaagttttggtttcagaacaaacgtactcaaatgaaggtat |
102 |
Q |
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|||||||||||||| ||||||||||||||||| | ||||| |||||||| |||||||||||||| |||||| | |||||||||||||||| |
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| T |
16825182 |
aagcaaaggaaggagttaagcagagagttagggcttgagcctttgcaagtcaagttttggtttcaaaacaaaaggactcaaatgaaggtat |
16825272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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