View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19949_low_4 (Length: 312)

Name: NF19949_low_4
Description: NF19949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19949_low_4
NF19949_low_4
[»] chr3 (15 HSPs)
chr3 (13-85)||(54765832-54765904)
chr3 (191-297)||(22434406-22434510)
chr3 (13-85)||(54763838-54763910)
chr3 (195-246)||(22465652-22465703)
chr3 (23-85)||(1317714-1317776)
chr3 (255-297)||(22440552-22440594)
chr3 (191-246)||(22633164-22633220)
chr3 (17-81)||(54764059-54764123)
chr3 (200-258)||(22351602-22351658)
chr3 (255-297)||(22465756-22465798)
chr3 (224-258)||(22628530-22628564)
chr3 (112-176)||(22440386-22440450)
chr3 (186-246)||(22448433-22448493)
chr3 (17-81)||(54763596-54763660)
chr3 (17-81)||(54764675-54764739)
[»] chr2 (2 HSPs)
chr2 (13-83)||(1078181-1078251)
chr2 (13-85)||(1076788-1076860)
[»] chr5 (3 HSPs)
chr5 (13-89)||(27434027-27434103)
chr5 (17-81)||(27433014-27433078)
chr5 (13-45)||(13549442-13549474)
[»] chr4 (1 HSPs)
chr4 (13-85)||(54960969-54961041)
[»] scaffold0206 (2 HSPs)
scaffold0206 (13-81)||(10581-10649)
scaffold0206 (13-85)||(10821-10893)
[»] chr6 (3 HSPs)
chr6 (14-85)||(5323037-5323108)
chr6 (19-85)||(5323834-5323900)
chr6 (13-45)||(30695937-30695969)


Alignment Details
Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 54765832 - 54765904
Alignment:
Q  13 aatatcgtaaataaataaaatgcatgggagaagcgaggattgagtaaaatttcagaagtaactcaaatgcacg 85  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  54765832 aatatcgtaaataaataaaatgcatgggagaagcgagcattgagtaaaatttcagaagtaactcaaatgcacg 54765904  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 191 - 297
Target Start/End: Original strand, 22434406 - 22434510
Alignment:
Q  191 attaatttcttacaatcattcataggaaa-gatttcacatcatatattatacatcataaacaactcaatgaaaaacaacgcattcttttttattgaggaa 289  Q
    |||||||||||||||||||||| |||||| ||| ||||| ||||||||||||||| |||  |   |||||||||||||| ||||||||||||||||||||    
T  22434406 attaatttcttacaatcattcaaaggaaaagatctcacaacatatattatacatcttaataa---caatgaaaaacaacacattcttttttattgaggaa 22434502  T
Q  290 gggaagtg 297  Q
    ||||||||    
T  22434503 gggaagtg 22434510  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 54763838 - 54763910
Alignment:
Q  13 aatatcgtaaataaataaaatgcatgggagaagcgaggattgagtaaaatttcagaagtaactcaaatgcacg 85  Q
    |||||||||||||||||||||| | || |||| || | |||||  ||||||||| ||||||||||||||||||    
T  54763838 aatatcgtaaataaataaaatgaacggaagaaacgggcattgacaaaaatttcaaaagtaactcaaatgcacg 54763910  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 22465652 - 22465703
Alignment:
Q  195 atttcttacaatcattcataggaaagatttcacatcatatattatacatcat 246  Q
    |||||||||||||||| | ||||||||| ||||| |||||||||||||||||    
T  22465652 atttcttacaatcatttaaaggaaagatctcacaacatatattatacatcat 22465703  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 1317714 - 1317776
Alignment:
Q  23 ataaataaaatgcatgggagaagcgaggattgagtaaaatttcagaagtaactcaaatgcacg 85  Q
    ||||||||||||| ||||||||| |   ||||| ||||||||||||| |||||||||||||||    
T  1317714 ataaataaaatgcttgggagaagtggacattgaataaaatttcagaactaactcaaatgcacg 1317776  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 22440552 - 22440594
Alignment:
Q  255 caatgaaaaacaacgcattcttttttattgaggaagggaagtg 297  Q
    |||||||||||||| |||||||||||||||||||| |||||||    
T  22440552 caatgaaaaacaacacattcttttttattgaggaatggaagtg 22440594  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 22633164 - 22633220
Alignment:
Q  191 attaatttcttacaatcatt-cataggaaagatttcacatcatatattatacatcat 246  Q
    |||||||||||||||||||| || |||||| || ||||| |||||||||||||||||    
T  22633164 attaatttcttacaatcatttcaaaggaaatatctcacaacatatattatacatcat 22633220  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 54764059 - 54764123
Alignment:
Q  17 tcgtaaataaataaaatgcatgggagaagcgaggattgagtaaaatttcagaagtaactcaaatg 81  Q
    ||||||||| ||||||||||||||||||  | | ||||| |||||||||| || |||||||||||    
T  54764059 tcgtaaatatataaaatgcatgggagaaaagggcattgactaaaatttcataattaactcaaatg 54764123  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 22351602 - 22351658
Alignment:
Q  200 ttacaatcattcataggaaagatttcacatcatatattatacatcataaacaactcaat 258  Q
    ||||||||||||| || |||||| ||||| |||||  ||||||||||||||||||||||    
T  22351602 ttacaatcattcaaagaaaagatctcacaacatat--tatacatcataaacaactcaat 22351658  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 22465756 - 22465798
Alignment:
Q  255 caatgaaaaacaacgcattcttttttattgaggaagggaagtg 297  Q
    |||||||||||||| |||| |||||||||||||||||| ||||    
T  22465756 caatgaaaaacaacacattgttttttattgaggaagggcagtg 22465798  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 258
Target Start/End: Original strand, 22628530 - 22628564
Alignment:
Q  224 tcacatcatatattatacatcataaacaactcaat 258  Q
    ||||| |||||||||||||||||||||||||||||    
T  22628530 tcacaacatatattatacatcataaacaactcaat 22628564  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 22440386 - 22440450
Alignment:
Q  112 aatacaaagaaaaggagttacagcagccaagataagtaaaagtaacgaccaaatctctagaggaa 176  Q
    ||||||||||||||| ||  ||||| |||||||||||||||  ||| | |||||||| |||||||    
T  22440386 aatacaaagaaaaggggtagcagcacccaagataagtaaaaacaacaaacaaatctcaagaggaa 22440450  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 22448433 - 22448493
Alignment:
Q  186 aaaacattaatttcttacaatcattcataggaaagatttcacatcatatattatacatcat 246  Q
    |||| ||||||||||||||||||||||    || ||| ||||| |||||||||||||||||    
T  22448433 aaaatattaatttcttacaatcattcaacaaaaggatctcacaacatatattatacatcat 22448493  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 54763596 - 54763660
Alignment:
Q  17 tcgtaaataaataaaatgcatgggagaagcgaggattgagtaaaatttcagaagtaactcaaatg 81  Q
    ||||||||| |||||||||| |||||||| | | | ||  ||||||||||||| |||||||||||    
T  54763596 tcgtaaatatataaaatgcaggggagaagtgggcaatgcctaaaatttcagaattaactcaaatg 54763660  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 54764675 - 54764739
Alignment:
Q  17 tcgtaaataaataaaatgcatgggagaagcgaggattgagtaaaatttcagaagtaactcaaatg 81  Q
    ||||||||| || |||||||||||||||| | | ||||| | |||||||| || |||||||||||    
T  54764675 tcgtaaatatatcaaatgcatgggagaagagggcattgacttaaatttcataattaactcaaatg 54764739  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 1078181 - 1078251
Alignment:
Q  13 aatatcgtaaataaataaaatgcatgggagaagcgaggattgagtaaaatttcagaagtaactcaaatgca 83  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  1078181 aatatcgtaaataaataaaatgcatgggagaagcgggcattgagtaaaatttcagaagtaactcaaatgca 1078251  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 1076788 - 1076860
Alignment:
Q  13 aatatcgtaaataaataaaatgcatgggagaagcgaggattgagtaaaatttcagaagtaactcaaatgcacg 85  Q
    |||||||||||||||||||||| | || |||| || | |||||  ||||||||| ||||||||||||||||||    
T  1076788 aatatcgtaaataaataaaatgaacggaagaaacgggcattgacaaaaatttcaaaagtaactcaaatgcacg 1076860  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 27434027 - 27434103
Alignment:
Q  13 aatatcgtaaataaataaaatgcatgggagaagcgaggattgagtaaaatttcagaagtaactcaaatgcacgtgat 89  Q
    ||||| ||||||||||||||||||||||||||| | | |||||||||||||||| ||||||||||||||||| ||||    
T  27434027 aatattgtaaataaataaaatgcatgggagaagtgggcattgagtaaaatttcataagtaactcaaatgcacatgat 27434103  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 27433014 - 27433078
Alignment:
Q  17 tcgtaaataaataaaatgcatgggagaagcgaggattgagtaaaatttcagaagtaactcaaatg 81  Q
    ||||||||| |||||||| |||||||||| ||| ||| | |||||||||| || |||||||||||    
T  27433014 tcgtaaatatataaaatgtatgggagaagtgagcattaattaaaatttcaaaattaactcaaatg 27433078  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 13549442 - 13549474
Alignment:
Q  13 aatatcgtaaataaataaaatgcatgggagaag 45  Q
    |||||||||||||||||||||||||| ||||||    
T  13549442 aatatcgtaaataaataaaatgcatgagagaag 13549474  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 54960969 - 54961041
Alignment:
Q  13 aatatcgtaaataaataaaatgcatgggagaagcgaggattgagtaaaatttcagaagtaactcaaatgcacg 85  Q
    |||||||||||||||||||||||| |||| || || | ||||| |||||||||||||||||||||||||||||    
T  54960969 aatatcgtaaataaataaaatgcacgggaaaaacgggcattgactaaaatttcagaagtaactcaaatgcacg 54961041  T

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Target: scaffold0206 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 10649 - 10581
Alignment:
Q  13 aatatcgtaaataaataaaatgcatgggagaagcgaggattgagtaaaatttcagaagtaactcaaatg 81  Q
    ||||||||||||||||||||||||| | ||||||||  |||||  ||||||||| ||||||||||||||    
T  10649 aatatcgtaaataaataaaatgcatagaagaagcgaacattgacaaaaatttcaaaagtaactcaaatg 10581  T

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Target: scaffold0206; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 10893 - 10821
Alignment:
Q  13 aatatcgtaaataaataaaatgcatgggagaagcgaggattgagtaaaatttcagaagtaactcaaatgcacg 85  Q
    |||||| | ||||||||||||||||| |||||||||| ||| | |||||| ||| |||| |||||||||||||    
T  10893 aatatcatgaataaataaaatgcatgagagaagcgagcatttactaaaatatcataagttactcaaatgcacg 10821  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 5323037 - 5323108
Alignment:
Q  14 atatcgtaaataaataaaatgcatgggagaagcgaggattgagtaaaatttcagaagtaactcaaatgcacg 85  Q
    ||||| |||||||||||||||||||||||||||| | ||||| ||||| |||| || ||||| |||||||||    
T  5323037 atatcataaataaataaaatgcatgggagaagcgggcattgactaaaagttcaaaattaacttaaatgcacg 5323108  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 5323834 - 5323900
Alignment:
Q  19 gtaaataaataaaatgcatgggagaagcgaggattgagtaaaatttcagaagtaactcaaatgcacg 85  Q
    |||| ||| |||||||||||||||||| | | |||||  |||| |||| ||||||||||||||||||    
T  5323834 gtaactaactaaaatgcatgggagaagtgggcattgacaaaaaattcaaaagtaactcaaatgcacg 5323900  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 30695969 - 30695937
Alignment:
Q  13 aatatcgtaaataaataaaatgcatgggagaag 45  Q
    |||||||||||||||||||||||||| ||||||    
T  30695969 aatatcgtaaataaataaaatgcatgagagaag 30695937  T

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