View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19949_low_9 (Length: 249)

Name: NF19949_low_9
Description: NF19949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19949_low_9
NF19949_low_9
[»] chr2 (9 HSPs)
chr2 (25-232)||(16656541-16656748)
chr2 (80-232)||(43626329-43626481)
chr2 (39-169)||(12257918-12258048)
chr2 (40-229)||(12235767-12235956)
chr2 (40-232)||(12244344-12244536)
chr2 (27-229)||(16661010-16661212)
chr2 (39-232)||(14705431-14705624)
chr2 (40-166)||(7543246-7543372)
chr2 (81-166)||(12000343-12000428)
[»] chr7 (30 HSPs)
chr7 (69-232)||(1302309-1302472)
chr7 (69-232)||(8660242-8660405)
chr7 (59-232)||(7876775-7876948)
chr7 (60-232)||(8647690-8647862)
chr7 (40-232)||(6790379-6790571)
chr7 (30-232)||(8668424-8668626)
chr7 (75-232)||(3148375-3148532)
chr7 (32-232)||(8630189-8630389)
chr7 (40-232)||(13332091-13332283)
chr7 (40-232)||(10492942-10493134)
chr7 (40-226)||(8602703-8602889)
chr7 (69-232)||(8610662-8610825)
chr7 (31-232)||(8584477-8584678)
chr7 (93-232)||(8655371-8655510)
chr7 (59-170)||(8591386-8591497)
chr7 (59-166)||(8582651-8582758)
chr7 (40-175)||(17261361-17261496)
chr7 (39-178)||(27829340-27829479)
chr7 (59-169)||(8635503-8635613)
chr7 (69-166)||(8572588-8572685)
chr7 (71-166)||(8546675-8546770)
chr7 (73-157)||(8104067-8104151)
chr7 (40-232)||(17269069-17269261)
chr7 (59-169)||(29576993-29577103)
chr7 (40-169)||(8538773-8538902)
chr7 (40-169)||(29581169-29581298)
chr7 (69-172)||(8577287-8577390)
chr7 (59-108)||(8382295-8382344)
chr7 (73-157)||(8016309-8016393)
chr7 (69-139)||(8568836-8568906)
[»] chr1 (3 HSPs)
chr1 (68-232)||(15596056-15596220)
chr1 (30-232)||(4677481-4677683)
chr1 (75-232)||(34465189-34465346)
[»] chr4 (5 HSPs)
chr4 (30-229)||(9323008-9323207)
chr4 (30-229)||(9377487-9377686)
chr4 (30-229)||(9334980-9335178)
chr4 (69-232)||(35133452-35133615)
chr4 (30-136)||(30776076-30776182)
[»] chr5 (2 HSPs)
chr5 (40-232)||(42554128-42554320)
chr5 (30-232)||(28220906-28221108)
[»] chr8 (2 HSPs)
chr8 (40-232)||(43745793-43745982)
chr8 (60-160)||(12529857-12529957)
[»] chr6 (3 HSPs)
chr6 (30-120)||(28911273-28911363)
chr6 (83-154)||(11159652-11159723)
chr6 (113-171)||(11198234-11198292)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 16656748 - 16656541
Alignment:
Q  25 tcgagaatagaaacataccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaac 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16656748 tcgagaatagaaacataccaaagatggtgttttgtgggttagcggcaacttgattcttagcagcatcaccgatcaacctttgatcatgagtgaaagcaac 16656649  T
Q  125 aaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaagg 224  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||| | |||||||||||| ||||||||||||||||||||||||||    
T  16656648 aaaagaaggtgttgttctgtttccctggtcattgtgtatgatctctgctctgttgtgacggtccatccacacagcaacacatgaataagttgttccaagg 16656549  T
Q  225 tctattcc 232  Q
    ||||||||    
T  16656548 tctattcc 16656541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 232
Target Start/End: Original strand, 43626329 - 43626481
Alignment:
Q  80 cttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttc 179  Q
    ||||||||||||||||||||||||||| || | |||||||| ||||||||||||||| ||||||||||||||||||||||| || |||||||||||  |     
T  43626329 cttagcagcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaaggtgtagttctgtttccttggtcattgtggataatctctactcttctg 43626428  T
Q  180 tgatgttccatccacacaccaacacatgaataagttgttccaaggtctattcc 232  Q
    |  |  || | ||||||| ||| ||| ||||| ||||||||||||||||||||    
T  43626429 ttttcatcaagccacacagcaatacaagaatacgttgttccaaggtctattcc 43626481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 169
Target Start/End: Complemental strand, 12258048 - 12257918
Alignment:
Q  39 ataccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttg 138  Q
    ||||||||||  |||| ||| ||||| || ||||| ||||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||||| ||||    
T  12258048 ataccaaagacagtgtgttgagggttggcagcagcttgattcttagcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttg 12257949  T
Q  139 ttctgtttccttggtcattgtgtatgatctc 169  Q
    ||||||||||||| || ||||| ||||||||    
T  12257948 ttctgtttccttgatcgttgtgaatgatctc 12257918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 229
Target Start/End: Original strand, 12235767 - 12235956
Alignment:
Q  40 taccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgt 139  Q
    ||||||||| ||||||||| ||||| |  ||||| ||||||||||||||||||||||||||||| ||||  |  |||||||||||||||||||| |||||    
T  12235767 taccaaagacggtgttttgcgggttggaagcagcttgattcttagcagcatcaccaatcaacctctgattttcggtgaaagcaacaaaagaaggggttgt 12235866  T
Q  140 tctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctat 229  Q
    ||| || ||||| || ||||| |||||||| ||||     || ||||||  ||| ||  ||||||||||||| ||||| |||||||||||    
T  12235867 tctattgccttgatcgttgtgaatgatctcaactcgagagtgctgttcctgccatactgcaacacatgaatatgttgtaccaaggtctat 12235956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 232
Target Start/End: Complemental strand, 12244536 - 12244344
Alignment:
Q  40 taccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgt 139  Q
    |||||||||  |||||||| | |||||| ||||| ||||| ||||||||||||||||| ||||||||||| | ||||||||||||| |||||||||||||    
T  12244536 taccaaagacagtgttttgagagttagcagcagcttgatttttagcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtgttgt 12244437  T
Q  140 tctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctattcc 232  Q
    |||||| || || || ||||| ||||| || || |     || ||||||  ||| ||  ||||||||||||| ||||| ||||||||||||||    
T  12244436 tctgttgccctgatcgttgtgaatgatttcaacacgagagtgttgttcctgccatactgcaacacatgaatacgttgtaccaaggtctattcc 12244344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 16661212 - 16661010
Alignment:
Q  27 gagaatagaaacataccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaa 126  Q
    ||||||||||| ||| |||||| |||||||||||||||    ||||| |||| |||||||||| |||| | |||||||||| ||| ||| ||||||||||    
T  16661212 gagaatagaaatatagcaaagacggtgttttgtgggttgatagcagcttgatccttagcagcaccaccgaccaacctttgagcatcagtaaaagcaacaa 16661113  T
Q  127 aagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtc 226  Q
    ||||||||||  || |||| ||||  || ||||| || ||||| |||||||| |  | ||||| ||| ||| |||||||||| || |||||||| |||||    
T  16661112 aagaaggtgtaattttgttgccttcatcgttgtggataatctcaactctgtttttctcttccaaccaaacagcaacacatgagtatgttgttcctaggtc 16661013  T
Q  227 tat 229  Q
    |||    
T  16661012 tat 16661010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 232
Target Start/End: Original strand, 14705431 - 14705624
Alignment:
Q  39 ataccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttg 138  Q
    ||||||||||  |||||| | ||||| || ||||| ||||||||||||||||||||||||||||  ||||  |  |||||||||||||||||||| ||||    
T  14705431 ataccaaagacagtgtttcgagggttggcagcagcttgattcttagcagcatcaccaatcaaccgctgattttcggtgaaagcaacaaaagaaggagttg 14705530  T
Q  139 ttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctattcc 232  Q
    |||| || ||||| || ||||| ||||| || ||||  |  || ||||||  ||| ||  |||||||||| || ||||| ||||||||||||||    
T  14705531 ttctattgccttgatcgttgtgaatgatttcaactcgataatgttgttcctgccatactgcaacacatgagtacgttgtaccaaggtctattcc 14705624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 166
Target Start/End: Original strand, 7543246 - 7543372
Alignment:
Q  40 taccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgt 139  Q
    |||||||||  |||||||| ||||| |  ||||| ||||||||||||  |||||| |||||||| ||||  |  ||||||||||||||||||||||||||    
T  7543246 taccaaagacagtgttttgagggttggaagcagcttgattcttagcattatcaccgatcaacctctgattttcggtgaaagcaacaaaagaaggtgttgt 7543345  T
Q  140 tctgtttccttggtcattgtgtatgat 166  Q
    |||||| |||||||| ||||| |||||    
T  7543346 tctgttgccttggtcgttgtgaatgat 7543372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 12000343 - 12000428
Alignment:
Q  81 ttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgat 166  Q
    ||||||||||||||||  ||||||||||  | ||||||||||||| ||||||||||| || |||| ||||| || ||||| |||||    
T  12000343 ttagcagcatcaccaacaaacctttgattttcagtgaaagcaacacaagaaggtgttattttgttgccttgatcgttgtgaatgat 12000428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 69 - 232
Target Start/End: Original strand, 1302309 - 1302472
Alignment:
Q  69 gcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatct 168  Q
    |||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||| ||||||||| |||| |||||||| ||||  |||||||    
T  1302309 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatct 1302408  T
Q  169 ctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctattcc 232  Q
    ||||||| || ||||  |||| ||||||| ||||||| |||||||| |||||||||||||||||    
T  1302409 ctactctattgtgattctccagccacacagcaacacacgaataagtagttccaaggtctattcc 1302472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 69 - 232
Target Start/End: Original strand, 8660242 - 8660405
Alignment:
Q  69 gcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatct 168  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| ||||||||||||| ||||  |||||||    
T  8660242 gcagcctgattcttagcagcatcaccaatcaacctttgatcgtcagtgaaagcaacaaatgaaggtgttgttttgtttccttggtcgttgtagatgatct 8660341  T
Q  169 ctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctattcc 232  Q
    | ||||  || ||||  |||| ||||||| ||||||| ||||| ||||||||||||||||||||    
T  8660342 cgactcgattgtgattctccagccacacagcaacacacgaataggttgttccaaggtctattcc 8660405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 59 - 232
Target Start/End: Complemental strand, 7876948 - 7876775
Alignment:
Q  59 tgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattg 158  Q
    |||||||| |||||||||||| || ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||| ||||||    
T  7876948 tgggttagaggcagcctgatttttggcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgttgttctgttgccttgttcattg 7876849  T
Q  159 tgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctattcc 232  Q
    || || || || ||||| || || |  || | ||||||| ||||||| ||||| ||||||||||||||||||||    
T  7876848 tgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcc 7876775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 60 - 232
Target Start/End: Original strand, 8647690 - 8647862
Alignment:
Q  60 gggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgt 159  Q
    |||||||  ||||||||||| ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||| |||||||    
T  8647690 gggttagaagcagcctgatttttagcggcatcaccaatcaacctttgatcatcggtgaaagcaacaaaagaaggtgtagttctgtttccttgatcattgt 8647789  T
Q  160 gtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctattcc 232  Q
    | || ||||| ||||| || || |  || | ||||||| ||||||| ||||| ||||||||||||||||||||    
T  8647790 gaataatctcaactctattgtgttcatcaagccacacagcaacacacgaatacgttgttccaaggtctattcc 8647862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 40 - 232
Target Start/End: Original strand, 6790379 - 6790571
Alignment:
Q  40 taccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgt 139  Q
    |||| ||||| |||||||| ||||| | |||||| |||| ||||||||||||||| ||||||||||| ||||  ||||||||||||||||||||||| ||    
T  6790379 taccgaagatagtgttttgcgggttggtggcagcttgatacttagcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtggt 6790478  T
Q  140 tctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctattcc 232  Q
    | |||| |||||||||||||| || ||||| ||||| || || |  || | ||||||||||||||| ||||| |||||||| |||||||||||    
T  6790479 tttgttaccttggtcattgtgaataatctcaactctattgtgttcatcaagccacacaccaacacaagaatatgttgttcccaggtctattcc 6790571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 232
Target Start/End: Original strand, 8668424 - 8668626
Alignment:
Q  30 aatagaaacataccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaag 129  Q
    ||||||||  |||||||||| |||||||  |||||||  ||||  ||||||||||||||||| |||||||||||||| ||||   |||||||||||||||    
T  8668424 aatagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcgccaatcaacctttgttcattgttgaaagcaacaaaag 8668523  T
Q  130 aaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctat 229  Q
    |||||||| ||| ||||||||| |||||||| || ||||| ||||| |  || || || | ||||||| ||||||||||||| ||||||||||| |||||    
T  8668524 aaggtgttattcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacatgaataggttgttccaagatctat 8668623  T
Q  230 tcc 232  Q
    |||    
T  8668624 tcc 8668626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 75 - 232
Target Start/End: Original strand, 3148375 - 3148532
Alignment:
Q  75 tgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactc 174  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||| |||| |||||||||||||| || ||||| ||||    
T  3148375 tgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctcaactc 3148474  T
Q  175 tgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctattcc 232  Q
    |||| || |  || | ||| ||| |||| || ||||| |||||||||||||| |||||    
T  3148475 tgttgtgctcatcgagccaaacagcaacgcacgaatacgttgttccaaggtcgattcc 3148532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 32 - 232
Target Start/End: Original strand, 8630189 - 8630389
Alignment:
Q  32 tagaaacataccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaa 131  Q
    |||||| ||||||||||  ||||||||||||||   ||||||||||| |||||||||| |||||| ||||||||||||||  || |||||||| || |||    
T  8630189 tagaaatataccaaagacagtgttttgtgggttgatggcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacgaaggaa 8630288  T
Q  132 ggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctattc 231  Q
    |||||  || | || ||||  |||||||| || ||||| ||||||||||  | ||||| ||| ||||||||||| ||||| |||||||||||||||||||    
T  8630289 ggtgtgattttattgccttcatcattgtgaataatctcaactctgttcttttcttccaaccaaacaccaacacaagaataggttgttccaaggtctattc 8630388  T
Q  232 c 232  Q
    |    
T  8630389 c 8630389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 40 - 232
Target Start/End: Complemental strand, 13332283 - 13332091
Alignment:
Q  40 taccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgt 139  Q
    |||||||||| |||||||  ||||||| |||||  |||||||| ||||||||||||||||| ||||||||||   |||||||||||||||||||||| ||    
T  13332283 taccaaagatagtgttttcagggttagtggcagattgattcttggcagcatcaccaatcaatctttgatcattgttgaaagcaacaaaagaaggtgtagt 13332184  T
Q  140 tctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctattcc 232  Q
    ||| |||||||| |||||||| || ||||| ||||| |  || |  || | ||||||| |||||||||| || |||||||||||||| |||||    
T  13332183 tctatttccttgatcattgtgaataatctcaactctttggtgttcatcaagccacacagcaacacatgagtaggttgttccaaggtcgattcc 13332091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 40 - 232
Target Start/End: Complemental strand, 10493134 - 10492942
Alignment:
Q  40 taccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgt 139  Q
    ||||||||| ||||||||  ||||||| |||||  |||||||||||||||||||| ||||||||||||||||   |||||||||||||||||||||| ||    
T  10493134 taccaaagacggtgttttcagggttagtggcagattgattcttagcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtagt 10493035  T
Q  140 tctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctattcc 232  Q
    ||| |||||||| |||||||| || || || ||||| |  || |  || | ||| ||| |||||||||| || ||||||||||| ||||||||    
T  10493034 tctatttccttgatcattgtgaataatttcaactctttggtgttcatcaagccatacagcaacacatgagtaggttgttccaagatctattcc 10492942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 8602703 - 8602889
Alignment:
Q  40 taccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgt 139  Q
    |||||||||| |||||   ||||||||  ||||||||||| || ||||||||||| |||||||||| ||||| ||| ||||||||||||||||| || ||    
T  8602703 taccaaagatagtgttgactgggttagaagcagcctgatttttggcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaagaaggagtagt 8602802  T
Q  140 tctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtc 226  Q
    |||||||||||| |||||||| || |||||| | ||||| |  || |||  ||| ||| | ||||||||||| ||||||||||||||    
T  8602803 tctgtttccttgatcattgtgaataatctctgccctgttgttttggtcctgccaaacagctacacatgaataggttgttccaaggtc 8602889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 69 - 232
Target Start/End: Original strand, 8610662 - 8610825
Alignment:
Q  69 gcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatct 168  Q
    ||||| ||||| |||||||||||||| |||||||||||||||  || |||||||||||||||||| || |||||||||||||| ||||| || || ||||    
T  8610662 gcagcttgatttttagcagcatcacctatcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatct 8610761  T
Q  169 ctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctattcc 232  Q
    |  ||||||| |  ||||||  ||| ||| ||||||||||||| ||||||||||| || |||||    
T  8610762 cagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattcc 8610825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 232
Target Start/End: Complemental strand, 8584678 - 8584477
Alignment:
Q  31 atagaaacataccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaaga 130  Q
    ||||||| ||||||||||  ||||| | ||||||    |||||||||| |||||||||| |||||| ||||||||||||||  || ||||||||||| ||    
T  8584678 atagaaatataccaaagacagtgttctctgggttgatagcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacaaagga 8584579  T
Q  131 aggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctatt 230  Q
    ||||||  || | || ||||  || ||||| || ||||| ||||||||||  | ||||| ||| ||||||||||| ||||| ||||||||||||||||||    
T  8584578 aggtgtgattttattgccttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaacaccaacacaagaataggttgttccaaggtctatt 8584479  T
Q  231 cc 232  Q
    ||    
T  8584478 cc 8584477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 93 - 232
Target Start/End: Original strand, 8655371 - 8655510
Alignment:
Q  93 ccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatcc 192  Q
    |||||||||||||||| || |||||||||||||| ||||||||| ||||| || ||||| |||||||| || ||||| ||||| || ||||  || | ||    
T  8655371 ccaatcaacctttgataatcagtgaaagcaacaacagaaggtgtagttctattgccttgatcattgtgaataatctcaactctattgtgatcgtcaagcc 8655470  T
Q  193 acacaccaacacatgaataagttgttccaaggtctattcc 232  Q
    ||||| ||||||||||||| |||||||| |||||||||||    
T  8655471 acacagcaacacatgaataggttgttccgaggtctattcc 8655510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 170
Target Start/End: Original strand, 8591386 - 8591497
Alignment:
Q  59 tgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattg 158  Q
    ||||||||  |||||||| || || |||||||||||||||||||||||||||| ||| ||||||||||||||||||||  |||| |||||||| ||||||    
T  8591386 tgggttagaagcagcctggttttttgcagcatcaccaatcaacctttgatcattagtaaaagcaacaaaagaaggtgtaattctatttccttgatcattg 8591485  T
Q  159 tgtatgatctct 170  Q
    || || ||||||    
T  8591486 tgaataatctct 8591497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 8582651 - 8582758
Alignment:
Q  59 tgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattg 158  Q
    ||||||||  ||||| ||||| || ||||||||||||||||| ||||||  || ||| ||||||||| |||||||||||||| |||||||||| ||||||    
T  8582651 tgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattg 8582750  T
Q  159 tgtatgat 166  Q
    ||||||||    
T  8582751 tgtatgat 8582758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 175
Target Start/End: Original strand, 17261361 - 17261496
Alignment:
Q  40 taccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgt 139  Q
    ||||||||| |||||||| ||||||   |||||| ||||||||||| |||||||| |||||||||| ||| | ||  ||||||||||||||||| ||  |    
T  17261361 taccaaagacggtgttttctgggtttatggcagcttgattcttagcggcatcaccgatcaacctttcatctttagcaaaagcaacaaaagaaggagtaat 17261460  T
Q  140 tctgtttccttggtcattgtgtatgatctctactct 175  Q
    | |||||||||| |||||||| |||||||| |||||    
T  17261461 tttgtttccttgatcattgtgaatgatctcaactct 17261496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 178
Target Start/End: Complemental strand, 27829479 - 27829340
Alignment:
Q  39 ataccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttg 138  Q
    ||||||||||| |||||||| ||||| |  ||||| || |||||||||||||||||||||||||| || |  |  |||||||||||| ||||||||||||    
T  27829479 ataccaaagatagtgttttgagggttggaagcagcttggttcttagcagcatcaccaatcaacctctgtttgtccgtgaaagcaacacaagaaggtgttg 27829380  T
Q  139 ttctgtttccttggtcattgtgtatgatctctactctgtt 178  Q
    |  |||| ||||| |||||||| || ||||| ||||||||    
T  27829379 tcttgttgccttgttcattgtgaataatctccactctgtt 27829340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 169
Target Start/End: Complemental strand, 8635613 - 8635503
Alignment:
Q  59 tgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattg 158  Q
    |||||||| || |||||| || || |||||||||||||||||||||||  | | ||||||||||||| ||||||||||  ||||||| ||||| ||||||    
T  8635613 tgggttagaggaagcctggtttttggcagcatcaccaatcaacctttgtgcgtcagtgaaagcaacacaagaaggtgtgattctgttcccttgctcattg 8635514  T
Q  159 tgtatgatctc 169  Q
    || ||||||||    
T  8635513 tggatgatctc 8635503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 8572588 - 8572685
Alignment:
Q  69 gcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgat 166  Q
    ||||| ||||| || ||||||||||| ||||| ||||||  || ||| ||||||||| |||| || ||||||||||||||||||||||||||||||||    
T  8572588 gcagcttgatttttggcagcatcaccgatcaatctttgagaattagtaaaagcaacacaagagggagttgttctgtttccttggtcattgtgtatgat 8572685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 8546675 - 8546770
Alignment:
Q  71 agcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgat 166  Q
    ||||||||| || |||||||||||||||| ||||||   ||  |||||||||||| |||||||||||||| |||||||||| |||||||| |||||    
T  8546675 agcctgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgat 8546770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 8104067 - 8104151
Alignment:
Q  73 cctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcatt 157  Q
    |||||||||||||||||||||| |||||||||| |  || ||||||||||||| |||| ||||| |||||||| ||||| |||||    
T  8104067 cctgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggtgtcgttctgttcccttgatcatt 8104151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 40 - 232
Target Start/End: Original strand, 17269069 - 17269261
Alignment:
Q  40 taccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgt 139  Q
    ||||||||| |||||||| ||||||   |||||| ||||||||||| | |||||| || ||||||| ||| | ||  |||||||||||||| || || ||    
T  17269069 taccaaagacggtgttttctgggttcatggcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaaagacggagtagt 17269168  T
Q  140 tctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctattcc 232  Q
    | |||| ||||| ||||||||||| ||||| |||||    || | |||   ||||||| |||||||||| || || || ||||||||||||||    
T  17269169 tttgttgccttgatcattgtgtataatctcaactctaccgtgttcttcatgccacacagcaacacatgagtatgtcgtcccaaggtctattcc 17269261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 169
Target Start/End: Complemental strand, 29577103 - 29576993
Alignment:
Q  59 tgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattg 158  Q
    |||||| | |||||||||||| |||||||||| |||||| |||||| |   || ||||||||| |||| ||||||||| ||||| || ||||| ||||||    
T  29577103 tgggtttgaggcagcctgatttttagcagcattaccaattaaccttagtgaatcagtgaaagctacaacagaaggtgtggttctattgccttgatcattg 29577004  T
Q  159 tgtatgatctc 169  Q
    || ||||||||    
T  29577003 tggatgatctc 29576993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 8538773 - 8538902
Alignment:
Q  40 taccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgt 139  Q
    |||||||||  ||||||  |||||||| || ||| ||||| || ||||||||||||||||| | ||||  || | | ||| ||||| |||||||||| ||    
T  8538773 taccaaagacagtgtttgttgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaaccaacacaagaaggtgtggt 8538872  T
Q  140 tctgtttccttggtcattgtgtatgatctc 169  Q
    | |||||||||| || ||||||||||||||    
T  8538873 tttgtttccttgatcgttgtgtatgatctc 8538902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 29581298 - 29581169
Alignment:
Q  40 taccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgt 139  Q
    |||||||||| ||||||  |||||| |||||||||||||| |||||||||| || |||||||||  |    | ||||||||| |||| ||||||||| ||    
T  29581298 taccaaagatagtgtttgttgggtttgcggcagcctgatttttagcagcattactaatcaacctcagtgagtcagtgaaagctacaacagaaggtgtggt 29581199  T
Q  140 tctgtttccttggtcattgtgtatgatctc 169  Q
    ||  || ||||| |||||||| ||||||||    
T  29581198 tccattgccttgatcattgtggatgatctc 29581169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 8577287 - 8577390
Alignment:
Q  69 gcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatct 168  Q
    ||||| ||||| || |||||||| |||||||| ||||||  ||  || ||||||||| ||||||| || |||||||||||||| ||||||||||| || |    
T  8577287 gcagcttgatttttggcagcatcgccaatcaatctttgagaattggtaaaagcaacacaagaaggagtggttctgtttccttgatcattgtgtataattt 8577386  T
Q  169 ctac 172  Q
    ||||    
T  8577387 ctac 8577390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 8382344 - 8382295
Alignment:
Q  59 tgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgat 108  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||||||||    
T  8382344 tgggttagaggcagtctgattcttagcagcatcaccaaccaacctttgat 8382295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 157
Target Start/End: Complemental strand, 8016393 - 8016309
Alignment:
Q  73 cctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcatt 157  Q
    |||||||||||||||||||||| |||||||||| |  || ||||||||||||| |||| || || |||| ||| ||||| |||||    
T  8016393 cctgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggcgtcgttcggttcccttgatcatt 8016309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 8568836 - 8568906
Alignment:
Q  69 gcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgt 139  Q
    ||||| ||||| || ||||||||||||||||| ||||||   | ||||||||||||| |||||||||||||    
T  8568836 gcagcttgatttttggcagcatcaccaatcaatctttgagatttagtgaaagcaacacaagaaggtgttgt 8568906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 68 - 232
Target Start/End: Original strand, 15596056 - 15596220
Alignment:
Q  68 ggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatc 167  Q
    |||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||  |||||||||||||||||||||| || |||    
T  15596056 ggcagcttgactcttagcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtggataatc 15596155  T
Q  168 tctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctattcc 232  Q
    || ||||| ||||| |  || | ||||||| ||||||| ||||| ||||||||||||||||||||    
T  15596156 tcgactctattctgttcatcaagccacacagcaacacaagaatacgttgttccaaggtctattcc 15596220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 30 - 232
Target Start/End: Complemental strand, 4677683 - 4677481
Alignment:
Q  30 aatagaaacataccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaag 129  Q
    ||||||||  |||||||||  |||||||  | ||| | |||||  |||||||||||||||| |||||||||||||||||||| ||| |||||||||||||    
T  4677683 aatagaaatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcatcagtaaaagcaacaaaag 4677584  T
Q  130 aaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctat 229  Q
    ||||||||||| |||| ||||| |||||||  || ||||| |||||||| ||||  |||| ||||||| |||||||||||||||| |||||||| |||||    
T  4677583 aaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctat 4677484  T
Q  230 tcc 232  Q
    |||    
T  4677483 tcc 4677481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 232
Target Start/End: Complemental strand, 34465346 - 34465189
Alignment:
Q  75 tgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactc 174  Q
    |||||||||||||||| ||| ||||| |||||||||||||| |||||||||||||||||||| ||| |||| |||||||||||||  || ||||||||||    
T  34465346 tgattcttagcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtgtggttgtgttaccttggtcattgtcaataatctctactc 34465247  T
Q  175 tgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctattcc 232  Q
    |  | || ||||||  ||| ||  |||||||||| || ||||| ||||||||||||||    
T  34465246 tactgtgttgttcctgccatactgcaacacatgagtaggttgtgccaaggtctattcc 34465189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 229
Target Start/End: Complemental strand, 9323207 - 9323008
Alignment:
Q  30 aatagaaacataccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaag 129  Q
    ||||||||  |||||||||| |||||||  |||||||  ||||  |||||||||||||||||||||||||||||||| ||||   |||||||||||||||    
T  9323207 aatagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaag 9323108  T
Q  130 aaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctat 229  Q
    |||||||||||| ||||||||| |||||||| || ||||| ||||| |  || || || | ||||||| ||||||| ||||| ||||||||||| |||||    
T  9323107 aaggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaagatctat 9323008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 229
Target Start/End: Complemental strand, 9377686 - 9377487
Alignment:
Q  30 aatagaaacataccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaag 129  Q
    ||||||||  |||||||||| |||||||  |||||||  ||||  |||||||||||||||||||||||||||||||| ||||   |||||||||||||||    
T  9377686 aatagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaag 9377587  T
Q  130 aaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctat 229  Q
    |||||||||||| ||||||||| |||||||| || ||||| ||||| |  || || || | ||||||| ||||||| ||||| ||||||||||| |||||    
T  9377586 aaggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaagatctat 9377487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 30 - 229
Target Start/End: Complemental strand, 9335178 - 9334980
Alignment:
Q  30 aatagaaacataccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaag 129  Q
    ||||||||  |||||||||| |||||||  |||||||  ||||  ||||||||||||||||||||| |||||||||| ||||   |||||||||||||||    
T  9335178 aatagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcacca-tcaacctttgctcattgttgaaagcaacaaaag 9335080  T
Q  130 aaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctat 229  Q
    |||||||||||| ||||||||| |||||||| || ||||| ||||| |  || || || | ||||||| ||||||| ||||| ||||||||||| |||||    
T  9335079 aaggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaagatctat 9334980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 232
Target Start/End: Original strand, 35133452 - 35133615
Alignment:
Q  69 gcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatct 168  Q
    ||||| |||||||||||||||||||| |||||||||||||| | ||||||||||| | |||||||||||||| |||| | ||| || ||||| ||||| |    
T  35133452 gcagcttgattcttagcagcatcaccgatcaacctttgatccttagtgaaagcaatacaagaaggtgttgttttgttgctttgatcgttgtgaatgattt 35133551  T
Q  169 ctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctattcc 232  Q
    | ||||  |  || |||||   ||| ||  ||||||||||||| |||||||| |||||||||||    
T  35133552 cgactcgatagtgttgttcttgccatactgcaacacatgaatacgttgttccgaggtctattcc 35133615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 30776076 - 30776182
Alignment:
Q  30 aatagaaacataccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaag 129  Q
    ||||||||  |||||||||  |||||||| |||||    |||||||| | |||||||||| |||| | |||||||||| ||| |||||||||||||||||    
T  30776076 aatagaaatttaccaaagacagtgttttgagggttgatagcagcctggtccttagcagcagcaccgaccaacctttgaccatcagtgaaagcaacaaaag 30776175  T
Q  130 aaggtgt 136  Q
    |||||||    
T  30776176 aaggtgt 30776182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 40 - 232
Target Start/End: Complemental strand, 42554320 - 42554128
Alignment:
Q  40 taccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgt 139  Q
    |||||||||  |||||||| ||||| | ||| |  |||| |||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||    
T  42554320 taccaaagacagtgttttgggggttggtggcggtttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgt 42554221  T
Q  140 tctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctattcc 232  Q
    | |||| ||||| |||||||| || ||||| ||||| || || |  ||   |||||||  |||||| ||||| ||||||||||||||||||||    
T  42554220 tttgttgccttgatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctattcc 42554128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 232
Target Start/End: Original strand, 28220906 - 28221108
Alignment:
Q  30 aatagaaacataccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaag 129  Q
    ||||||||  ||||||||| ||| ||||| |||||   ||| |  ||||| ||||||||||| ||||||||||||| |||||  ||||||||||||||||    
T  28220906 aatagaaatttaccaaagacggtattttgggggttgttggccgtttgatttttagcagcatcgccaatcaacctttcatcatcggtgaaagcaacaaaag 28221005  T
Q  130 aaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctat 229  Q
    |||| |||||| |||| ||||| |||||||| || ||||| || || || || |  ||   ||||||| ||||||||||||| ||||||||||| |||||    
T  28221006 aaggagttgttttgttgccttgatcattgtgaataatctcaaccctattgtgttcatcttgccacacagcaacacatgaatacgttgttccaagatctat 28221105  T
Q  230 tcc 232  Q
    |||    
T  28221106 tcc 28221108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 232
Target Start/End: Original strand, 43745793 - 43745982
Alignment:
Q  40 taccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgt 139  Q
    ||||||||||||||||||| ||||| | ||| |  |||||||||||||| ||||| |||||||||| || || ||| |||||||||||||||   |||||    
T  43745793 taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaa---gttgt 43745889  T
Q  140 tctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctattcc 232  Q
    | |||| ||||| |||||||| || ||||| ||||| || || |  ||   ||||||| ||||||| ||||| ||||||||||||||||||||    
T  43745890 tttgttgccttgatcattgtgaataatctcaactctattttgttcatcttgccacacagcaacacacgaatacgttgttccaaggtctattcc 43745982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 12529857 - 12529957
Alignment:
Q  60 gggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgt 159  Q
    ||||||| || ||| ||||| || ||||||| ||||||||| || |||  || ||| ||||||||| |||||||||||||| |||||||||| |||||||    
T  12529857 gggttagaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgt 12529956  T
Q  160 g 160  Q
    |    
T  12529957 g 12529957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 28911273 - 28911363
Alignment:
Q  30 aatagaaacataccaaagatggtgttttgtgggttagcggcagcctgattcttagcagcatcaccaatcaacctttgatcatgagtgaaag 120  Q
    |||||||| ||||| || |  |||||||  ||||| | ||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  28911273 aatagaaatatacctaaaacagtgttttcggggttggtggcagcctgattcttagcagcatcaccaatcaacctttgatcatcggtgaaag 28911363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 11159652 - 11159723
Alignment:
Q  83 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtc 154  Q
    |||||||||||||||||  ||||||   | |||||| |||||| |||||||||||||||| || ||||||||    
T  11159652 agcagcatcaccaatcattctttgagagtcagtgaaggcaacataagaaggtgttgttctattcccttggtc 11159723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 11198234 - 11198292
Alignment:
Q  113 agtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctcta 171  Q
    |||||| |||||| |||||||||||||||| || |||||||| ||  ||||||||||||    
T  11198234 agtgaaggcaacataagaaggtgttgttctattcccttggtcgttcggtatgatctcta 11198292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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