View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1994_high_13 (Length: 275)
Name: NF1994_high_13
Description: NF1994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1994_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 42898734 - 42898992
Alignment:
| Q |
1 |
aacaccggaaaatttacatttatcccaacatgcacttggtactctcaagtctaaggagagtgagactaaaaaa-------------gagagaatgagtga |
87 |
Q |
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| T |
42898734 |
aacaccggaaaatttacatttatcccaacatgcacttagtactctcaagtctaaggagagtgagactaaaaaaaatgactgaaaaagagagaatgagtga |
42898833 |
T |
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| Q |
88 |
cagtgaatatttcttgactgttatagcattttagtaacagtatttgtgtt----tgtttgtttatatattatatgattttcaggagggacagtttcataa |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42898834 |
cagtgaatatttcttgactgttatagcattttagtaacagtatttgtgtttgtttgtttgtttatatattatatgattttcaggagggacagtttcataa |
42898933 |
T |
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| Q |
184 |
ctcacagagccttctgtgatgcattagctgaggagagttcaagaaccgtaattcctcaa |
242 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42898934 |
ctcacagagccttctgtgatgcattagctgaggagagttcaagaaccgtaattcctcaa |
42898992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 50786145 - 50786101
Alignment:
| Q |
164 |
caggagggacagtttcataactcacagagccttctgtgatgcatt |
208 |
Q |
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| T |
50786145 |
caggagagacagtttcataactcacagagccttctgtgatgcatt |
50786101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 202
Target Start/End: Original strand, 4160895 - 4160929
Alignment:
| Q |
168 |
agggacagtttcataactcacagagccttctgtga |
202 |
Q |
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| T |
4160895 |
agggacagtttcatcactcacagagccttctgtga |
4160929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 5788056 - 5787997
Alignment:
| Q |
168 |
agggacagtttcataactcacagagccttctgtgatgcattagctgaggagagttcaaga |
227 |
Q |
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||||||||||||||||| || ||||| || |||||||||||||| || |||||| ||||| |
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| T |
5788056 |
agggacagtttcataacacatagagcattttgtgatgcattagcagaagagagtgcaaga |
5787997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 30517399 - 30517352
Alignment:
| Q |
164 |
caggagggacagtttcataactcacagagccttctgtgatgcattagc |
211 |
Q |
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| T |
30517399 |
caggagagacagcttcataactcacagagccttttgtgatgccttagc |
30517352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 44150203 - 44150153
Alignment:
| Q |
164 |
caggagggacagtttcataactcacagagccttctgtgatgcattagctga |
214 |
Q |
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|||||| |||||||| ||||| |||||||| ||||||||||||||| |||| |
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| T |
44150203 |
caggagagacagttttataacccacagagcattctgtgatgcattaactga |
44150153 |
T |
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