View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1994_high_14 (Length: 271)
Name: NF1994_high_14
Description: NF1994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1994_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 25 - 258
Target Start/End: Complemental strand, 42899243 - 42899010
Alignment:
| Q |
25 |
ggttggtaggatggaagtgtaggagtaggaccatttctagggttagggttttcataaaggtgtagatcttgatccaaacttgaatagtttgaagagagat |
124 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42899243 |
ggttggtaggatggaagtgtagaagtaggaccatttctagggttagggttttcataaaggtgtagatcttgatccaaacttgaatagtttgaagagagat |
42899144 |
T |
|
| Q |
125 |
caatggatgattgacaaagccaagagggtatttgtacttcttgttctggccttaacatgttgaaactttgatgctctttcttcaatgtgaagccttggat |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42899143 |
caatggatgattgacaaagccaagagggtatttgtacttcttgttctggccttaacatgttgaaactttgatgctctttcttcaatgtgaagccttggat |
42899044 |
T |
|
| Q |
225 |
atcttgtgtttggagattgttcatgttgtgatga |
258 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
42899043 |
atcttgagtttggagattgttcatgttgtgatga |
42899010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University