View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1994_high_3 (Length: 474)
Name: NF1994_high_3
Description: NF1994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1994_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Original strand, 41874852 - 41875295
Alignment:
| Q |
18 |
cttgtagcttcctgggtctagagtgcttgctaaaagctcatcatgctttctactaaggtacaaatcaagcttatttgccccactcttggttctaattaaa |
117 |
Q |
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| T |
41874852 |
cttgtagcttcctggctctagagtgcttgctaaaagctcatcatgctttctactaaggtacaaatcaagcttatttgccccactcttggttctaattaaa |
41874951 |
T |
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| Q |
118 |
aaatttagcacaacataaatgtttaaaagtaatgttaattaatcgcatattgttacaaataataaaacaaagacatgatgaagacataccgattagttcg |
217 |
Q |
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| T |
41874952 |
aaatttagcacaacataaatgtttaaaagtaatgttaattaatcgcatattgttacaaataataaaacaaagacatgatgaagacataccgattagttcg |
41875051 |
T |
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| Q |
218 |
aagtcgctcgtattcttgatcatagatcagaaagacaaagtacaattcacttttggtgcttcccattaagaatgaatctttc-nnnnnnncttttcttgt |
316 |
Q |
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| T |
41875052 |
aagtcgctcgtattcttgatcatagatcagaaagacaaagtacaattcacttttggtgcttcccattaagaatgaatctttcttttttttcttttcttgt |
41875151 |
T |
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| Q |
317 |
taatttgattggagaacgatgtttgcaatggatgtcttgtgctccatccactagctagctatttatacacaaaaggttcaatgactttccgaacagcaac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41875152 |
taatttgattggagaacgatgtttgcaatggatgtcttgtgctccatccactagctagctatttatacacaaaaggttcaatgactttccgaacagcaac |
41875251 |
T |
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| Q |
417 |
aataatagagaagaataatgagtaggcccacattggtttcattgg |
461 |
Q |
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| T |
41875252 |
aataatagagaagaataat-agtaggcccacattggtttcattgg |
41875295 |
T |
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