View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1994_high_4 (Length: 445)
Name: NF1994_high_4
Description: NF1994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1994_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 12 - 427
Target Start/End: Original strand, 10497722 - 10498136
Alignment:
| Q |
12 |
gaatatgaccaccaaatttgaaagtcaaagtttaggcatggctgcttataaaaagcagaaaacaagtctaatatctaataagctttgggatgggtacctc |
111 |
Q |
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| T |
10497722 |
gaatatgaccaccaaatttgaaagtcaaagtttagccatggctgctaataaaaagcagaaaacaagtctaatatctaataagctttgggatgggtacctc |
10497821 |
T |
|
| Q |
112 |
aagttgaactctgctctaaccgttaccacggttgcattctttcataggtaattaaatcatattcttttaaagttaatttgctagtgtaacttttacattt |
211 |
Q |
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| T |
10497822 |
aagttgaactctgctctaaccgttaccacggttgcattctttcataggtaattaaatcatcttcttttaaagttaatttgctagtgtaacttttacattt |
10497921 |
T |
|
| Q |
212 |
ttaaatttaataaagttgaagctatgtaggatattacaatttcatgctactaagttgattgatatatgatgcaaacaaagttcattttctttcttcatac |
311 |
Q |
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| T |
10497922 |
ttaaatttaataaagttgaagctatgtaggatattacaa-ttcatgctactaagttgattgatgtatgatgcaaactaagttcattttctgtcttcatac |
10498020 |
T |
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| Q |
312 |
aattagattagtttatgaaaagaattggaagacaaaaattatggagtgtcgtttatatcttttgtccaacctttgttgagtgaaaattgctctataaact |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
10498021 |
aattagattagtttatgaaaagaattggaagacaaaaattatggagtgtcgtttatatcttttgtccaacctttcttgagtgaaaattgcaatataaact |
10498120 |
T |
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| Q |
412 |
tctaataaggttgaaa |
427 |
Q |
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|||||||| ||||||| |
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| T |
10498121 |
tctaataaagttgaaa |
10498136 |
T |
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