View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1994_low_1 (Length: 563)

Name: NF1994_low_1
Description: NF1994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1994_low_1
NF1994_low_1
[»] chr4 (16 HSPs)
chr4 (277-422)||(13873589-13873734)
chr4 (419-554)||(13873418-13873559)
chr4 (20-103)||(13873908-13873993)
chr4 (481-554)||(25852209-25852288)
chr4 (481-554)||(34844881-34844960)
chr4 (481-554)||(52983614-52983693)
chr4 (481-554)||(40058975-40059054)
chr4 (481-553)||(54127466-54127544)
chr4 (481-547)||(46714387-46714459)
chr4 (481-554)||(19660655-19660734)
chr4 (481-554)||(32986192-32986271)
chr4 (347-415)||(493793-493862)
chr4 (481-548)||(1985831-1985904)
chr4 (347-415)||(18191454-18191523)
chr4 (517-554)||(49287895-49287932)
chr4 (481-516)||(41621762-41621798)
[»] scaffold0576 (1 HSPs)
scaffold0576 (481-554)||(5205-5284)
[»] scaffold0026 (1 HSPs)
scaffold0026 (481-554)||(97489-97568)
[»] chr8 (12 HSPs)
chr8 (481-554)||(3734746-3734825)
chr8 (481-554)||(34237778-34237857)
chr8 (481-548)||(18532106-18532179)
chr8 (481-548)||(20305907-20305980)
chr8 (481-548)||(21092540-21092613)
chr8 (481-554)||(4718644-4718723)
chr8 (481-554)||(19471608-19471687)
chr8 (481-554)||(19542532-19542611)
chr8 (481-554)||(19590085-19590164)
chr8 (483-548)||(27746464-27746535)
chr8 (485-554)||(28193477-28193552)
chr8 (481-554)||(39349255-39349334)
[»] chr7 (15 HSPs)
chr7 (481-554)||(2751270-2751349)
chr7 (481-554)||(2103054-2103133)
chr7 (481-554)||(7175985-7176064)
chr7 (481-554)||(7275276-7275355)
chr7 (481-554)||(21217956-21218035)
chr7 (481-550)||(23854395-23854470)
chr7 (481-554)||(40543033-40543112)
chr7 (484-554)||(22119890-22119966)
chr7 (481-554)||(7799955-7800034)
chr7 (481-554)||(10091187-10091266)
chr7 (481-554)||(17212052-17212131)
chr7 (481-553)||(18044106-18044184)
chr7 (481-548)||(2344298-2344371)
chr7 (483-546)||(28089817-28089886)
chr7 (518-554)||(654827-654863)
[»] chr6 (7 HSPs)
chr6 (481-554)||(15360221-15360300)
chr6 (481-553)||(12591632-12591710)
chr6 (481-554)||(9238970-9239049)
chr6 (481-557)||(11007160-11007242)
chr6 (486-554)||(11448871-11448945)
chr6 (481-554)||(22576062-22576141)
chr6 (482-548)||(21982449-21982521)
[»] chr1 (13 HSPs)
chr1 (481-554)||(8077642-8077721)
chr1 (481-554)||(4621360-4621439)
chr1 (481-554)||(7197369-7197448)
chr1 (481-554)||(15059525-15059604)
chr1 (481-554)||(24674388-24674467)
chr1 (481-554)||(46607805-46607884)
chr1 (481-554)||(7946839-7946918)
chr1 (481-554)||(27454989-27455068)
chr1 (481-554)||(34778337-34778416)
chr1 (481-553)||(29057461-29057539)
chr1 (481-548)||(2537699-2537766)
chr1 (484-554)||(24122021-24122097)
chr1 (481-516)||(47091685-47091721)
[»] chr5 (14 HSPs)
chr5 (481-548)||(32059569-32059642)
chr5 (481-555)||(22392696-22392776)
chr5 (481-554)||(1827653-1827732)
chr5 (481-548)||(31288075-31288148)
chr5 (481-547)||(23270652-23270724)
chr5 (481-547)||(25586927-25586999)
chr5 (483-548)||(4603774-4603845)
chr5 (481-554)||(13038577-13038656)
chr5 (481-554)||(13108572-13108651)
chr5 (481-554)||(15641228-15641307)
chr5 (483-554)||(8484784-8484861)
chr5 (347-415)||(34658792-34658861)
chr5 (483-554)||(38631084-38631161)
chr5 (480-554)||(36954812-36954892)
[»] chr3 (22 HSPs)
chr3 (481-548)||(30257619-30257692)
chr3 (481-556)||(34492696-34492777)
chr3 (476-553)||(7470339-7470422)
chr3 (481-554)||(8456273-8456352)
chr3 (481-554)||(30807276-30807355)
chr3 (481-554)||(35492906-35492985)
chr3 (481-554)||(40133572-40133651)
chr3 (481-554)||(45529877-45529956)
chr3 (481-554)||(46576343-46576422)
chr3 (481-548)||(48977383-48977456)
chr3 (476-554)||(7485648-7485732)
chr3 (482-548)||(53424305-53424377)
chr3 (481-554)||(21362938-21363017)
chr3 (481-554)||(40940820-40940899)
chr3 (481-553)||(15566623-15566700)
chr3 (481-553)||(25289838-25289916)
chr3 (481-553)||(49258386-49258464)
chr3 (485-548)||(25379760-25379829)
chr3 (517-554)||(39041975-39042012)
chr3 (481-516)||(4252562-4252598)
chr3 (484-554)||(4462631-4462707)
chr3 (517-553)||(51532826-51532862)
[»] scaffold0199 (1 HSPs)
scaffold0199 (481-554)||(8530-8609)
[»] chr2 (7 HSPs)
chr2 (481-554)||(18976548-18976627)
chr2 (481-547)||(36390698-36390768)
chr2 (484-554)||(44976277-44976353)
chr2 (517-554)||(4852595-4852632)
chr2 (517-554)||(5394054-5394091)
chr2 (481-548)||(6714410-6714483)
chr2 (481-548)||(44946182-44946255)
[»] scaffold0049 (1 HSPs)
scaffold0049 (481-548)||(66757-66830)
[»] scaffold0623 (1 HSPs)
scaffold0623 (484-554)||(1179-1255)
[»] scaffold0366 (2 HSPs)
scaffold0366 (484-554)||(9422-9498)
scaffold0366 (484-547)||(12130-12199)
[»] scaffold0068 (1 HSPs)
scaffold0068 (481-553)||(41768-41846)
[»] scaffold0459 (1 HSPs)
scaffold0459 (484-547)||(10823-10892)
[»] scaffold0002 (1 HSPs)
scaffold0002 (347-415)||(183654-183723)


Alignment Details
Target: chr4 (Bit Score: 130; Significance: 4e-67; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 277 - 422
Target Start/End: Complemental strand, 13873734 - 13873589
Alignment:
Q  277 catgtataaagtttggcaactttagttccttaaagtcaaaatgtagttttcagggcagtggattctcgcccgttacttaagctgacattctcgcttctgc 376  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  13873734 catgcataaagtttggcaactttagttccttaaagtcaaaatgtagttttcagggcagtggattctcgcccgttactcaagctaacattctcacttctgc 13873635  T
Q  377 ttcgtccaatcatgcttgtgcaggtattcgttctaaggctccccta 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  13873634 ttcgtccaatcatgcttgtgcaggtattcgttctaaggctccccta 13873589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 419 - 554
Target Start/End: Complemental strand, 13873559 - 13873418
Alignment:
Q  419 cctagtcctcgttcctcttgggcgctttatctacttaccccattaataactagccattttgtacccatttggggttggccta-tggttggcttgagatc- 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||     
T  13873559 cctagtcctcgttcctcttgggcgctttatctacttaccccattaataactagccgttttgtacccatttggggttggcctagtggtttgcttgggatct 13873460  T
Q  517 ----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
        |||||||||| ||||||||||| ||||||||| |||||    
T  13873459 tggagtttgctccttcaaaggtctcaggttcgattccctctg 13873418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 13873993 - 13873908
Alignment:
Q  20 tggactatttttaaaaggtacgttcattaacccataactctctctctc--atttgtccctttaaaatactatgcaaaactatcatg 103  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  13873993 tggactatttttaaaaggtacgttcattaacacataactctctctctctcatttgtccctttaaaatactatgcaaaactatcatg 13873908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 25852209 - 25852288
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     |||||||||||||||||||||| ||||||||| |||||    
T  25852209 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctg 25852288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 34844960 - 34844881
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||| ||||||||||     ||||||||||||| |||||||| |||||||||||||||    
T  34844960 acccatttggggttggcctagtggtttgcttgagatcttggagtttgctcctccagaggtctcaggttcgattctctctg 34844881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 52983614 - 52983693
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||||||||     ||||||||||||| |||||||| ||||||||| |||||    
T  52983614 acccatttggggttggcctagtggttggcttgagatcttggagtttgctcctccagaggtctcaggttcgattccctctg 52983693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 40059054 - 40058975
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||| | |||||||| |||||||||||||||    
T  40059054 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctctagaggtctcaggttcgattctctctg 40058975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 553
Target Start/End: Complemental strand, 54127544 - 54127466
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctct 553  Q
    |||||||||||||||||||| ||||||||||| ||||     |||||||||||||||||||||| |||| |||| ||||    
T  54127544 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcaattccctct 54127466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 547
Target Start/End: Original strand, 46714387 - 46714459
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgatt 547  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||    
T  46714387 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatt 46714459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 19660734 - 19660655
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||| ||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||| |||||||||||    
T  19660734 acccatttggagttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggtttgattctctctg 19660655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 32986192 - 32986271
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| |||| |||| |||||    
T  32986192 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcaattccctctg 32986271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 493862 - 493793
Alignment:
Q  347 cgttacttaagctgacattctcgcttctgcttcgtccaatcatgcttgtgcaggta-ttcgttctaaggc 415  Q
    ||||||| |||| |||||||||||||| ||||||||||| | |||| | || |||| |||||||||||||    
T  493862 cgttactcaagccgacattctcgcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggc 493793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 548
Target Start/End: Original strand, 1985831 - 1985904
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattc 548  Q
    ||||||||||| |||||||| ||||||||||| ||||     ||||||||||||| |||||||| |||||||||    
T  1985831 acccatttgggattggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattc 1985904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 18191523 - 18191454
Alignment:
Q  347 cgttacttaagctgacattctcgcttctgcttcgtccaatcatgcttgtgcaggta-ttcgttctaaggc 415  Q
    ||||||| |||| |||||||||||||| ||||||||||| | |||| | || |||| |||||||||||||    
T  18191523 cgttactcaagccgacattctcgcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggc 18191454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 49287895 - 49287932
Alignment:
Q  517 gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  49287895 gtttgctcctccagaggtctcaggttcgattctctctg 49287932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 516
Target Start/End: Complemental strand, 41621798 - 41621762
Alignment:
Q  481 acccatttggggttggcct-atggttggcttgagatc 516  Q
    ||||||||||||||||||| |||||||||||||||||    
T  41621798 acccatttggggttggcctaatggttggcttgagatc 41621762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 5284 - 5205
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     |||||||||||||||||||||| ||||||||| |||||    
T  5284 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctg 5205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 97568 - 97489
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     |||||||||||||||||||||| ||||||||| |||||    
T  97568 acccatttggggttggcctagtggttggcttgggatcttgtagtttgctcctccaaaggtctcaggttcgattccctctg 97489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 3734825 - 3734746
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     |||||||||||||||||||||| ||||||||| |||||    
T  3734825 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctg 3734746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 34237857 - 34237778
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  34237857 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 34237778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 481 - 548
Target Start/End: Original strand, 18532106 - 18532179
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattc 548  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| |||||||||    
T  18532106 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattc 18532179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 481 - 548
Target Start/End: Original strand, 20305907 - 20305980
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattc 548  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||||||||||||  ||||||||    
T  20305907 acccatttggggttggcctagtggttggcttgggatcttagagtttgctcctccaaaggtctcagtttcgattc 20305980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 481 - 548
Target Start/End: Original strand, 21092540 - 21092613
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattc 548  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||||||||||||  ||||||||    
T  21092540 acccatttggggttggcctagtggttggcttgggatcttagagtttgctcctccaaaggtctcagtttcgattc 21092613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 4718644 - 4718723
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     |||||||||| || |||||||| ||||||||| |||||    
T  4718644 acccatttggggttggcctagtggttggcttgggatcttggagtttgctccttcagaggtctcaggttcgattccctctg 4718723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 19471608 - 19471687
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||| ||||| |||||    
T  19471608 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggtttgattccctctg 19471687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 19542532 - 19542611
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||| ||||| |||||    
T  19542532 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggtttgattccctctg 19542611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 19590164 - 19590085
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||| ||||| |||||    
T  19590164 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggtttgattccctctg 19590085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 548
Target Start/End: Complemental strand, 27746535 - 27746464
Alignment:
Q  483 ccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattc 548  Q
    |||||||||||||||||| ||||||| ||| ||||     |||||||||||||||||||||| |||||||||    
T  27746535 ccatttggggttggcctagtggttggtttgggatcttggagtttgctcctccaaaggtctcaggttcgattc 27746464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 554
Target Start/End: Original strand, 28193477 - 28193552
Alignment:
Q  485 atttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  28193477 atttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 28193552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 39349255 - 39349334
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||| | ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  39349255 acccatttggggttggcccagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 39349334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 2751270 - 2751349
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     |||||||||||||||||||||| ||||||||| |||||    
T  2751270 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctg 2751349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 2103054 - 2103133
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  2103054 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 2103133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 7176064 - 7175985
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  7176064 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 7175985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 7275276 - 7275355
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  7275276 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 7275355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 21218035 - 21217956
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  21218035 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 21217956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 550
Target Start/End: Original strand, 23854395 - 23854470
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctc 550  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| |||||||||||    
T  23854395 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattctc 23854470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 40543112 - 40543033
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  40543112 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 40543033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 22119890 - 22119966
Alignment:
Q  484 catttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    ||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  22119890 catttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 22119966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 7800034 - 7799955
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    ||||||||||||||| |||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  7800034 acccatttggggttgacctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 7799955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 10091187 - 10091266
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||| ||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  10091187 acccatttggggttggtctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 10091266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 17212052 - 17212131
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    ||||||||||||||||| || ||||||||||| ||||     ||||||||||||| |||||||| |||| ||||||||||    
T  17212052 acccatttggggttggcttagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcaattctctctg 17212131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 553
Target Start/End: Original strand, 18044106 - 18044184
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctct 553  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| ||||| || ||||||||| ||||    
T  18044106 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtcccaggttcgattccctct 18044184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 548
Target Start/End: Original strand, 2344298 - 2344371
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattc 548  Q
    |||||||||||||||||||| ||||||||||| ||||     |||||||||||||||| |||||  ||||||||    
T  2344298 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaagctctcagattcgattc 2344371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 546
Target Start/End: Original strand, 28089817 - 28089886
Alignment:
Q  483 ccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgat 546  Q
    |||||||||||||||||| ||||||||||||||||     ||||||||||||| | |||||| |||||||    
T  28089817 ccatttggggttggcctagtggttggcttgagatcttggagtttgctcctccagatgtctcaggttcgat 28089886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 554
Target Start/End: Complemental strand, 654863 - 654827
Alignment:
Q  518 tttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  654863 tttgctcctccaaaggtctcaggttcgattccctctg 654827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 15360300 - 15360221
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     |||||||||||||||||||||| ||||||||| |||||    
T  15360300 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctg 15360221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 481 - 553
Target Start/End: Original strand, 12591632 - 12591710
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctct 553  Q
    |||||||||||||||||||| ||||||||||| ||||     |||||||||||||||||||||| ||||||||| ||||    
T  12591632 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctct 12591710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 9238970 - 9239049
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  9238970 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 9239049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 557
Target Start/End: Original strand, 11007160 - 11007242
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctgctc 557  Q
    |||||||||||||||  ||| ||||||||||| ||||     |||||||||||||||||||||| ||||||||| ||||||||    
T  11007160 acccatttggggttgatctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattcactctgctc 11007242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 11448871 - 11448945
Alignment:
Q  486 tttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    ||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| |||||||||||||||    
T  11448871 tttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattctctctg 11448945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 22576062 - 22576141
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| ||||||||  |||||||| |||||    
T  22576062 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcagattcgattccctctg 22576141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 548
Target Start/End: Complemental strand, 21982521 - 21982449
Alignment:
Q  482 cccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattc 548  Q
    ||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||| | |||||||||    
T  21982521 cccatttggggttggcctagtggttggcttgggatcttgaagtttgctcctccagaggtctgaggttcgattc 21982449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 8077642 - 8077721
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| |||||||||||||||    
T  8077642 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattctctctg 8077721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 4621439 - 4621360
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  4621439 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 4621360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 7197448 - 7197369
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  7197448 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 7197369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 15059604 - 15059525
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| |||||||||||  |||     ||||||||||||| |||||||| |||||||||||||||    
T  15059604 acccatttggggttggcctagtggttggcttggaatcttggagtttgctcctccagaggtctcaggttcgattctctctg 15059525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 24674388 - 24674467
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  24674388 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 24674467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 46607805 - 46607884
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| |||||| |||| ||||     |||||||||||||||||||||| ||||||||| |||||    
T  46607805 acccatttggggttggcctagtggttgacttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctg 46607884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 7946839 - 7946918
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    ||||||||||||| | |||| ||||||||||||||||     ||||||||||||| |||||||| ||||||||| |||||    
T  7946839 acccatttggggtcgacctagtggttggcttgagatcttgaagtttgctcctccagaggtctcaagttcgattccctctg 7946918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 27455068 - 27454989
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||| ||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  27455068 acccatttggggttggtctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattcactctg 27454989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 34778337 - 34778416
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||| ||||| |||||    
T  34778337 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggtttgattccctctg 34778416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 553
Target Start/End: Complemental strand, 29057539 - 29057461
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctct 553  Q
    |||||||||||||||||||| ||||||| ||| ||||     ||||||| |||||||||||||| ||||||||| ||||    
T  29057539 acccatttggggttggcctagtggttggtttgggatcttggagtttgctgctccaaaggtctcaggttcgattccctct 29057461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 548
Target Start/End: Original strand, 2537699 - 2537766
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatcgtttgctcctccaaaggtctcacgttcgattc 548  Q
    |||||||||||||||||||| ||||||| ||| |||| ||||||||||  ||||||||| ||| |||||    
T  2537699 acccatttggggttggcctagtggttggattgggatc-tttgctcctctcaaggtctcaggtttgattc 2537766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 24122021 - 24122097
Alignment:
Q  484 catttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||| || ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  24122021 catttggggttggcttagtggttggcttgggatcttggggtttgctcctccagaggtctcaggttcgattccctctg 24122097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 516
Target Start/End: Original strand, 47091685 - 47091721
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc 516  Q
    |||||||||||||||||||| ||||||||||||||||    
T  47091685 acccatttggggttggcctagtggttggcttgagatc 47091721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 481 - 548
Target Start/End: Complemental strand, 32059642 - 32059569
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattc 548  Q
    |||||||||||||||||||| ||||||||||| ||||     |||||||||||||||||||||| |||||||||    
T  32059642 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattc 32059569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 555
Target Start/End: Original strand, 22392696 - 22392776
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctgc 555  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| ||||||    
T  22392696 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctgc 22392776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 1827732 - 1827653
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    ||||||||||||||| |||| ||||||||||||||||     ||||||||||||| |||||||| ||||||||| |||||    
T  1827732 acccatttggggttgacctagtggttggcttgagatcttggagtttgctcctccagaggtctcaggttcgattccctctg 1827653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 481 - 548
Target Start/End: Complemental strand, 31288148 - 31288075
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattc 548  Q
    |||||||| ||||||||||| ||||||||||| ||||     |||||||||||||||||||||| |||||||||    
T  31288148 acccattttgggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcatgttcgattc 31288075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 547
Target Start/End: Complemental strand, 23270724 - 23270652
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgatt 547  Q
    |||||||||||||||||||| ||||||||||| ||||     |||||||| ||||||||||||| ||||||||    
T  23270724 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcatccaaaggtctcaagttcgatt 23270652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 547
Target Start/End: Original strand, 25586927 - 25586999
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgatt 547  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||    
T  25586927 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatt 25586999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 548
Target Start/End: Original strand, 4603774 - 4603845
Alignment:
Q  483 ccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattc 548  Q
    |||||||||||||||||| ||||||||||| ||||     |||||||||||||||| ||||| |||||||||    
T  4603774 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaagatctcaagttcgattc 4603845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 13038656 - 13038577
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||| ||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  13038656 acccatttggggttggcctagtggttggtttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 13038577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 13108651 - 13108572
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| || ||||| ||||||||| |||||    
T  13108651 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagagatctcaggttcgattccctctg 13108572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 15641307 - 15641228
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||| ||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  15641307 acccatttggggttagcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 15641228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 554
Target Start/End: Complemental strand, 8484861 - 8484784
Alignment:
Q  483 ccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||| ||||| |||||    
T  8484861 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggtttgattccctctg 8484784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 34658861 - 34658792
Alignment:
Q  347 cgttacttaagctgacattctcgcttctgcttcgtccaatcatgcttgtgcaggta-ttcgttctaaggc 415  Q
    ||||||| |||| |||||||||||||| ||||||||||| | |||| | || |||| |||||||||||||    
T  34658861 cgttactcaagccgacattctcgcttccgcttcgtccaaacctgctcgcgcgggtacttcgttctaaggc 34658792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 554
Target Start/End: Complemental strand, 38631161 - 38631084
Alignment:
Q  483 ccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||| ||||||||||| ||||     ||||||||||||| ||||||||  |||||||| |||||    
T  38631161 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcagattcgattccctctg 38631084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 554
Target Start/End: Original strand, 36954812 - 36954892
Alignment:
Q  480 tacccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    ||||||||||||||||||||| |||||| |||| ||||     ||||||||||| | |||||||| ||||||||| |||||    
T  36954812 tacccatttggggttggcctagtggttgccttgggatcttggagtttgctcctctagaggtctcaggttcgattccctctg 36954892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 481 - 548
Target Start/End: Original strand, 30257619 - 30257692
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattc 548  Q
    |||||||||||||||||||| ||||||||||| ||||     |||||||||||||||||||||| |||||||||    
T  30257619 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattc 30257692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 481 - 556
Target Start/End: Complemental strand, 34492777 - 34492696
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctgct 556  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||||    
T  34492777 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcatgttcgattccctctgct 34492696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 476 - 553
Target Start/End: Complemental strand, 7470422 - 7470339
Alignment:
Q  476 tttgtacccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctct 553  Q
    |||| |||||||||||||| ||||| |||||| |||||||||     |||||||||||||||||||||| ||||||||| ||||    
T  7470422 tttgaacccatttggggtttgcctagtggttgacttgagatcttggagtttgctcctccaaaggtctcaggttcgattccctct 7470339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 8456352 - 8456273
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  8456352 acccatttggggttggcctagtggttggcttgggatcttcgagtttgctcctccagaggtctcaggttcgattccctctg 8456273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 30807355 - 30807276
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  30807355 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 30807276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 35492906 - 35492985
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  35492906 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 35492985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 40133651 - 40133572
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| |||      |||||||||||||||||||||| ||||||||| |||||    
T  40133651 acccatttggggttggcctagtggttggcttgggattttggagtttgctcctccaaaggtctcaggttcgattccctctg 40133572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 45529956 - 45529877
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  45529956 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 45529877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 46576343 - 46576422
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  46576343 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 46576422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 481 - 548
Target Start/End: Original strand, 48977383 - 48977456
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattc 548  Q
    |||||||||||||||||||| |||||| |||| ||||     |||||||||||||||||||||| |||||||||    
T  48977383 acccatttggggttggcctagtggttgacttgggatcttggagtttgctcctccaaaggtctcaggttcgattc 48977456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 554
Target Start/End: Complemental strand, 7485732 - 7485648
Alignment:
Q  476 tttgtacccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||| ||||||||||||||||| || |||||| |||| ||||     |||||||||||||||||||||| ||||||||| |||||    
T  7485732 tttgaacccatttggggttggcatagtggttgacttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctg 7485648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 548
Target Start/End: Complemental strand, 53424377 - 53424305
Alignment:
Q  482 cccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattc 548  Q
    ||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| |||||||||    
T  53424377 cccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattc 53424305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 21362938 - 21363017
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| |||||| |||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  21362938 acccatttggggttggcctagtggttgacttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 21363017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 40940820 - 40940899
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||| ||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  40940820 acccatttggggttggtctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 40940899  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 553
Target Start/End: Complemental strand, 15566700 - 15566623
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctct 553  Q
    ||||||||||| |||||||| ||||||||||||||||     ||||||||||||| |||||||| ||||||||| ||||    
T  15566700 acccatttggg-ttggcctagtggttggcttgagatcttggagtttgctcctccagaggtctcaggttcgattccctct 15566623  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 553
Target Start/End: Complemental strand, 25289916 - 25289838
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctct 553  Q
    |||||||||||||||| ||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| ||||    
T  25289916 acccatttggggttggtctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctct 25289838  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 553
Target Start/End: Complemental strand, 49258464 - 49258386
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctct 553  Q
    |||||||||||||| ||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| ||||    
T  49258464 acccatttggggtttgcctagtggttggcttgggatcttgcagtttgctcctccagaggtctcaggttcgattccctct 49258386  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 548
Target Start/End: Original strand, 25379760 - 25379829
Alignment:
Q  485 atttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattc 548  Q
    |||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| |||||||||    
T  25379760 atttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattc 25379829  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 39042012 - 39041975
Alignment:
Q  517 gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  39042012 gtttgctcctccagaggtctcaagttcgattctctctg 39041975  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 516
Target Start/End: Complemental strand, 4252598 - 4252562
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc 516  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4252598 acccatttggggttggcctagtggttggcttgagatc 4252562  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 4462631 - 4462707
Alignment:
Q  484 catttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    ||||||||||||||||| ||||||||||||||||     ||||||| || |||| |||||| ||||||||| |||||    
T  4462631 catttggggttggcctagtggttggcttgagatcttggagtttgctacttcaaaagtctcatgttcgattccctctg 4462707  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 553
Target Start/End: Original strand, 51532826 - 51532862
Alignment:
Q  517 gtttgctcctccaaaggtctcacgttcgattctctct 553  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  51532826 gtttgcttctccaaaggtctcatgttcgattctctct 51532862  T

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Target: scaffold0199 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 8609 - 8530
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| |||||||| ||||||    
T  8609 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattatctctg 8530  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 18976627 - 18976548
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  18976627 acccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcatgttcgattccctctg 18976548  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 547
Target Start/End: Complemental strand, 36390768 - 36390698
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc---gtttgctcctccaaaggtctcacgttcgatt 547  Q
    |||||||||||||||||||| ||||||| ||| ||||   ||||||| |||||||||||||| ||||||||    
T  36390768 acccatttggggttggcctagtggttggtttgggatctgagtttgcttctccaaaggtctcaggttcgatt 36390698  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 44976353 - 44976277
Alignment:
Q  484 catttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    ||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  44976353 catttggggttggcctagtggttggcttgggatcttggggtttgctcctccagaggtctcaggttcgattccctctg 44976277  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 4852595 - 4852632
Alignment:
Q  517 gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  4852595 gtttgctcctccaaaggtctcaggttcgattccctctg 4852632  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 5394054 - 5394091
Alignment:
Q  517 gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  5394054 gtttgctcctccaaaggtctcaggttcgattccctctg 5394091  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 548
Target Start/End: Complemental strand, 6714483 - 6714410
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattc 548  Q
    ||||||||||| |||||||| ||||||||||||||||     ||||||||||||| |||||||| ||| |||||    
T  6714483 acccatttgggattggcctaatggttggcttgagatcttggagtttgctcctccagaggtctcaggtttgattc 6714410  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 548
Target Start/End: Complemental strand, 44946255 - 44946182
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattc 548  Q
    |||||||||||||||| ||| ||||||||||| ||||     ||||||||||||| |||||||| |||||||||    
T  44946255 acccatttggggttggtctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattc 44946182  T

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Target: scaffold0049 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 481 - 548
Target Start/End: Original strand, 66757 - 66830
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattc 548  Q
    ||||||||||| |||| ||| ||||||||||| ||||     ||||||||||||||||||||||||||||||||    
T  66757 acccatttgggattggtctagtggttggcttgggatcttggagtttgctcctccaaaggtctcacgttcgattc 66830  T

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Target: scaffold0623 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 1255 - 1179
Alignment:
Q  484 catttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    ||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  1255 catttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 1179  T

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Target: scaffold0366 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 9498 - 9422
Alignment:
Q  484 catttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctctg 554  Q
    ||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||| |||||    
T  9498 catttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 9422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 547
Target Start/End: Complemental strand, 12199 - 12130
Alignment:
Q  484 catttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgatt 547  Q
    ||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||    
T  12199 catttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatt 12130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 553
Target Start/End: Complemental strand, 41846 - 41768
Alignment:
Q  481 acccatttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgattctctct 553  Q
    |||||||||||||||||||| |||||| |||| ||||     ||||||||||||| |||||||| ||||||||| ||||    
T  41846 acccatttggggttggcctagtggttgacttgggatcttggagtttgctcctccagaggtctcaggttcgattccctct 41768  T

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Target: scaffold0459 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 547
Target Start/End: Complemental strand, 10892 - 10823
Alignment:
Q  484 catttggggttggccta-tggttggcttgagatc-----gtttgctcctccaaaggtctcacgttcgatt 547  Q
    ||||||||||||||||| ||||||||||| ||||     ||||||||||||| |||||||| ||||||||    
T  10892 catttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatt 10823  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 183654 - 183723
Alignment:
Q  347 cgttacttaagctgacattctcgcttctgcttcgtccaatcatgcttgtgcaggta-ttcgttctaaggc 415  Q
    ||||||| |||| |||||||||||||| ||||||||||| | |||| | || |||| |||||||||||||    
T  183654 cgttactcaagccgacattctcgcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggc 183723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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