View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1994_low_12 (Length: 311)
Name: NF1994_low_12
Description: NF1994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1994_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 9409073 - 9408798
Alignment:
| Q |
13 |
taggaagaaactgcatttgatgtatattttttatgataacctaatatgttcttaatattccattaccataggtttcgattattttcatgtaatgtaatat |
112 |
Q |
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| T |
9409073 |
taggaagaaactgcatttgatgtatatttttaatgataacctaatatgttcttaatattccattaccataggtttcgattattttcatgtaatgtaatat |
9408974 |
T |
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| Q |
113 |
gctttgtctttatgat-nnnnnnngagtaatatcctttagatttagaacttaacgaaaaggta-taccctttggtatatttggtatattaatgaattgaa |
210 |
Q |
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| T |
9408973 |
gctttgtc--tatgataaaaaaaagagtaatatcctttagatttagaacttaacgaaaaggtattaccc---------tttggtatattaatgaattgaa |
9408885 |
T |
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| Q |
211 |
aaagaaaactgcatgcacagaaaaatagtacgataaacataaaatatttaactgttcatgctgatcagtcacaataaagaaagaaaa |
297 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9408884 |
aaagaaaacttcatgcacagaaaaatagtacgataaacataagatatttaactgttcatgctgatcagtcacaataaagaaagaaaa |
9408798 |
T |
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