View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1994_low_13 (Length: 286)

Name: NF1994_low_13
Description: NF1994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1994_low_13
NF1994_low_13
[»] chr6 (1 HSPs)
chr6 (10-272)||(26836955-26837217)
[»] chr1 (3 HSPs)
chr1 (10-268)||(45422107-45422365)
chr1 (35-272)||(45412700-45412937)
chr1 (67-254)||(29801813-29802000)
[»] scaffold0025 (1 HSPs)
scaffold0025 (128-233)||(66254-66359)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 272
Target Start/End: Complemental strand, 26837217 - 26836955
Alignment:
Q  10 aatatatattctgaactagaaagattcaatcttaataatgaaaataatttttgtttgtgcaggtaaggtgttcatttactggctaggtacggaaccattt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  26837217 aatatatattctgaactagaaagattcaatcttaataatgaaaataatttttgtttttgcaggtaaggtgttcatttactggctaggtacggaacctttt 26837118  T
Q  110 ttgtacattgcgggtgcagaattcttgaagaaaatgtcaacagacgtgatggcaaagagatggggaaaacctaatgtttttagaaatgacagagatccca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26837117 ttgtacattgcgggtgcagaattcttgaagaaaatgtcaacagacgtgatggcaaagagatggggaaaacctaatgtttttagaaatgacagagatccca 26837018  T
Q  210 tgtttgggaatggcttggtcatggtcgagggcaatgattgggttcgtcaccgcgacattgttg 272  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  26837017 tgtttgggaatggcttggtcatggttgagggcaatgattgggttcgtcaccgcaacattgttg 26836955  T

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Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 268
Target Start/End: Complemental strand, 45422365 - 45422107
Alignment:
Q  10 aatatatattctgaactagaaagattcaatcttaataatgaaaataatttttgtttgtgcaggtaaggtgttcatttactggctaggtacggaaccattt 109  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45422365 aatatatattctgaactagaaatattcaatcttaataatgaaaataatttttgtttgtgcaggtaaggtgttcatttactggctaggtacggaaccattt 45422266  T
Q  110 ttgtacattgcgggtgcagaattcttgaagaaaatgtcaacagacgtgatggcaaagagatggggaaaacctaatgtttttagaaatgacagagatccca 209  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || || | ||||||||||||||| ||||| || |    
T  45422265 ttgtacattgcgggtgcagaattcttgaagaaaatgtcaacagaggtgatggcaaagagatgggggaagccaagtgtttttagaaatgatagagaaccta 45422166  T
Q  210 tgtttgggaatggcttggtcatggtcgagggcaatgattgggttcgtcaccgcgacatt 268  Q
    ||||||| | ||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  45422165 tgtttggaagtgggttggtcatggtcgagggcaatgattgggttcgtcaccgccacatt 45422107  T

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Target: chr1; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 35 - 272
Target Start/End: Complemental strand, 45412937 - 45412700
Alignment:
Q  35 tcaatcttaataatgaaaataatttttgtttgtgcaggtaaggtgttcatttactggctaggtacggaaccatttttgtacattgcgggtgcagaattct 134  Q
    ||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||    
T  45412937 tcaatcttaattatgagaataatttttgtttgtgtaggtaaggtgttcatttactggctaggtacagaaccatttttgtacattgcgaatgcagaattct 45412838  T
Q  135 tgaagaaaatgtcaacagacgtgatggcaaagagatggggaaaacctaatgtttttagaaatgacagagatcccatgtttgggaatggcttggtcatggt 234  Q
    ||||||||||||||||||| ||||||||||||||||||||||| || | ||||||||||||||| ||||||||||||||||| | ||| |||||||||||    
T  45412837 tgaagaaaatgtcaacagaagtgatggcaaagagatggggaaagccaagtgtttttagaaatgatagagatcccatgtttggaagtgggttggtcatggt 45412738  T
Q  235 cgagggcaatgattgggttcgtcaccgcgacattgttg 272  Q
    |||||| ||||||||||| ||||||||  |||||||||    
T  45412737 cgagggtaatgattgggtacgtcaccgtcacattgttg 45412700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 67 - 254
Target Start/End: Complemental strand, 29802000 - 29801813
Alignment:
Q  67 tgcaggtaaggtgttcatttactggctaggtacggaaccatttttgtacattgcgggtgcagaattcttgaagaaaatgtcaacagacgtgatggcaaag 166  Q
    |||||| ||||| ||||| || ||||||||  | ||||| ||| | |||||||| |   | |||||||||||||||||||| || || || || ||||||    
T  29802000 tgcaggaaaggttttcatctattggctaggcgcagaaccttttctctacattgcagaccctgaattcttgaagaaaatgtccactgaagttattgcaaag 29801901  T
Q  167 agatggggaaaacctaatgtttttagaaatgacagagatcccatgtttgggaatggcttggtcatggtcgagggcaatgattgggttc 254  Q
    |||||||||||||| ||||| ||||||||||| ||||| ||||||||||| || || ||||| ||||  || |||| ||| |||||||    
T  29801900 agatggggaaaaccaaatgtgtttagaaatgatagagagcccatgtttggaaaaggtttggttatggctgaaggcagtgaatgggttc 29801813  T

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Target: scaffold0025 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 128 - 233
Target Start/End: Complemental strand, 66359 - 66254
Alignment:
Q  128 gaattcttgaagaaaatgtcaacagacgtgatggcaaagagatggggaaaacctaatgtttttagaaatgacagagatcccatgtttgggaatggcttgg 227  Q
    |||||||||||||||||||| ||| | ||  |||| |||| |||||||||||||| ||| |||||||| ||||| |||||||||||||| ||||| ||||    
T  66359 gaattcttgaagaaaatgtccacaaaggttttggccaagacatggggaaaacctagtgtgtttagaaaagacagggatcccatgtttggaaatggtttgg 66260  T
Q  228 tcatgg 233  Q
    ||||||    
T  66259 tcatgg 66254  T

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