View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1994_low_17 (Length: 240)
Name: NF1994_low_17
Description: NF1994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1994_low_17 |
 | |
|
| [»] chr7 (7 HSPs) |
| |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
| [»] scaffold0289 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 14605237 - 14605456
Alignment:
| Q |
21 |
atcggtcagctgccgcacaacatttgcattggtgggaatttgaaatacttggctgttatgaataaccacttcacaggctcagttccaaagagtttgaaga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14605237 |
atcggtcagctgccgcacaacatttgcattggtgggaatttgaaatacttggctgttatgaataaccacttcacaggctcagttccaaagagtttgaaga |
14605336 |
T |
|
| Q |
121 |
attgctctagcattattaggattagacttgaacaaaaccaacttactggaaatataacagagattatagattttggagtatatccaaatttggtttacat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14605337 |
attgctctagcattattaggattagacttgaacaaaaccaacttactggaaatataacagagattatagattttggagtatatccaaatttggtttacat |
14605436 |
T |
|
| Q |
221 |
gcaattaagtcaaaacaatt |
240 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
14605437 |
gcaattaagtcaaaacaatt |
14605456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 240
Target Start/End: Original strand, 16024423 - 16024633
Alignment:
| Q |
24 |
ggtcagctgccgcacaacatttgcattggtgggaatttgaaatacttggctgttatgaataaccacttcacaggctcagttccaaagagtttgaagaatt |
123 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||| | |||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
16024423 |
ggtcagctgcctcacaacatttgcattggtgggaaattgaaatacttggctgctcaaaataaccacttcactggccgcgttccaaagagtttgaagaatt |
16024522 |
T |
|
| Q |
124 |
gctctagcattattaggattagacttgaacaaaaccaacttactggaaatataacagagattatagattttggagtatatccaaatttggtttacatgca |
223 |
Q |
| |
|
||||||||||||| || || |||||||||||||||||||||||||||||||||| || ||| ||||| ||||||||| |||||||||||||||| |
|
|
| T |
16024523 |
gctctagcattataagacttcgacttgaacaaaaccaacttactggaaatataaccga------agactttggtgtatatccagatttggtttacatgca |
16024616 |
T |
|
| Q |
224 |
attaagtcaaaacaatt |
240 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
16024617 |
attaagtcaaaacaatt |
16024633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 24 - 179
Target Start/End: Original strand, 16102224 - 16102379
Alignment:
| Q |
24 |
ggtcagctgccgcacaacatttgcattggtgggaatttgaaatacttggctgttatgaataaccacttcacaggctcagttccaaagagtttgaagaatt |
123 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||| |||| || | | |||||||||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
16102224 |
ggtcagctgcctcataacatttgcattggtgggaatttgaaatttttgggtgctctaaataaccacttcaccggccgagttcctaagagtttgaagaatt |
16102323 |
T |
|
| Q |
124 |
gctctagcattattaggattagacttgaacaaaaccaacttactggaaatataaca |
179 |
Q |
| |
|
||||||||||||| || |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16102324 |
gctctagcattataagacttagacttgaccaaaaccaacttactggaaatataaca |
16102379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 24 - 179
Target Start/End: Original strand, 16171902 - 16172057
Alignment:
| Q |
24 |
ggtcagctgccgcacaacatttgcattggtgggaatttgaaatacttggctgttatgaataaccacttcacaggctcagttccaaagagtttgaagaatt |
123 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||| |||| || | | |||||||||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
16171902 |
ggtcagctgcctcataacatttgcattggtgggaatttgaaatttttgggtgctctaaataaccacttcaccggccgagttcctaagagtttgaagaatt |
16172001 |
T |
|
| Q |
124 |
gctctagcattattaggattagacttgaacaaaaccaacttactggaaatataaca |
179 |
Q |
| |
|
||||||||||||| || |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16172002 |
gctctagcattataagacttagacttgaccaaaaccaacttactggaaatataaca |
16172057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 17847885 - 17848030
Alignment:
| Q |
36 |
cacaacatttgcattggtgggaatttgaaatacttggctgttatgaataaccacttcacaggctcagttccaaagagtttgaagaattgctctagcatta |
135 |
Q |
| |
|
||||| ||||||| |||||| || ||||||||||| |||||| || ||||||| ||||| || | ||||| | |||||||||||||||||| |||||| |
|
|
| T |
17847885 |
cacaatatttgcactggtggaaacttgaaatacttcgctgttttggataaccatttcactggtcctgttccgatgagtttgaagaattgctcaagcattg |
17847984 |
T |
|
| Q |
136 |
ttaggattagacttgaacaaaaccaacttactggaaatataacaga |
181 |
Q |
| |
|
| || ||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
17847985 |
taagaattaggcttgaacaaaaccaactttctggaaatataacaga |
17848030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 17826851 - 17826699
Alignment:
| Q |
24 |
ggtcagctgccgcacaacatttgcattggtgggaatttgaaatacttggctgttatgaataaccacttcacaggctcagttccaaagagtttgaagaatt |
123 |
Q |
| |
|
|||||||| || ||||| |||||||||||||| || |||||| ||| |||||| || | |||||||||| || | ||||| | |||||||||||||| |
|
|
| T |
17826851 |
ggtcagctcccacacaatatttgcattggtggaaacctgaaattctttgctgttttggagaaccacttcattggtcctgttcccatgagtttgaagaatt |
17826752 |
T |
|
| Q |
124 |
gctctagcattattaggattagacttgaacaaaaccaacttactggaaatata |
176 |
Q |
| |
|
||||||||||||| || ||||| |||||| ||||| | || ||||||||||| |
|
|
| T |
17826751 |
gctctagcattataagaattaggcttgaaaaaaacaacctatctggaaatata |
17826699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 15665941 - 15665882
Alignment:
| Q |
101 |
agttccaaagagtttgaagaattgctctagcattattaggattagacttgaacaaaacca |
160 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||| |||| |||||||| ||||| |
|
|
| T |
15665941 |
agttccaaaaagtttgaagaattgctctagccttattagacttaggcttgaacataacca |
15665882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 15010401 - 15010501
Alignment:
| Q |
83 |
taaccacttcacaggctcagttccaaagagtttgaagaattgctctagcattattaggattagacttgaacaaaaccaacttactggaaatataacagag |
182 |
Q |
| |
|
|||||| ||||||||| ||||||| ||||||||||||||||||| ||| ||| || | || ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15010401 |
taaccagttcacaggcctagttccagagagtttgaagaattgctcaagccttacgagactgaggcttgatcaaaaccaacttactggaaatataacagag |
15010500 |
T |
|
| Q |
183 |
a |
183 |
Q |
| |
|
| |
|
|
| T |
15010501 |
a |
15010501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 181
Target Start/End: Original strand, 15001508 - 15001606
Alignment:
| Q |
83 |
taaccacttcacaggctcagttccaaagagtttgaagaattgctctagcattattaggattagacttgaacaaaaccaacttactggaaatataacaga |
181 |
Q |
| |
|
|||||| ||||||||| ||||||| ||||||||||||||||||| ||| ||| || | |||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
15001508 |
taaccagttcacaggcctagttccagagagtttgaagaattgctcaagccttacgagagtgagacttcaacaaaaccaactgactggaaatataacaga |
15001606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 15016516 - 15016612
Alignment:
| Q |
83 |
taaccacttcacaggctcagttccaaagagtttgaagaattgctctagcattattaggattagacttgaacaaaaccaacttactggaaatataaca |
179 |
Q |
| |
|
|||||| ||||||||| ||||||| ||||||||||||||||||| ||| ||| || | || ||||||||||||||||| ||||||||||||||| |
|
|
| T |
15016516 |
taaccagttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgaacaaaaccaactgactggaaatataaca |
15016612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 14503381 - 14503481
Alignment:
| Q |
81 |
aataaccacttcacaggctcagttccaaagagtttgaagaattgctctagcattattaggattagacttgaacaaaaccaacttactggaaatataacag |
180 |
Q |
| |
|
|||||||| |||||||| || ||||||||||||| ||||||||||| ||| ||||||| |||| ||| || |||| ||| | |||||||||||||||| |
|
|
| T |
14503381 |
aataaccaattcacagggccaattccaaagagtttaaagaattgctccagccttattagagttaggcttcaaaaaaatcaattaactggaaatataacag |
14503480 |
T |
|
| Q |
181 |
a |
181 |
Q |
| |
|
| |
|
|
| T |
14503481 |
a |
14503481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 15040164 - 15040255
Alignment:
| Q |
90 |
ttcacaggctcagttccaaagagtttgaagaattgctctagcattattaggattagacttgaacaaaaccaacttactggaaatataacaga |
181 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| || || | | || | ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15040164 |
ttcacaggtccaattccaaagagtttgaagaattgttcaagtctaaagagagtgagacttgaacaaaaccaacttgctggaaatataacaga |
15040255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 14467202 - 14467252
Alignment:
| Q |
81 |
aataaccacttcacaggctcagttccaaagagtttgaagaattgctctagc |
131 |
Q |
| |
|
|||||||| ||||||||| || ||||||||||||||||||| ||||||||| |
|
|
| T |
14467202 |
aataaccaattcacaggcccaattccaaagagtttgaagaactgctctagc |
14467252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 14533458 - 14533412
Alignment:
| Q |
81 |
aataaccacttcacaggctcagttccaaagagtttgaagaattgctc |
127 |
Q |
| |
|
|||||||| ||||||||| || ||||||||||||||||||| ||||| |
|
|
| T |
14533458 |
aataaccaattcacaggcccaattccaaagagtttgaagaagtgctc |
14533412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 12178 - 12278
Alignment:
| Q |
81 |
aataaccacttcacaggctcagttccaaagagtttgaagaattgctctagcattattaggattagacttgaacaaaaccaacttactggaaatataacag |
180 |
Q |
| |
|
||||| || |||||||| | |||||||| |||||||||||||||||| ||| ||||||| |||| ||| || |||| ||| | |||||||||||||||| |
|
|
| T |
12178 |
aataatcatttcacaggattagttccaatgagtttgaagaattgctccagccttattagagttaggcttcaaaaaaatcaattaactggaaatataacag |
12277 |
T |
|
| Q |
181 |
a |
181 |
Q |
| |
|
| |
|
|
| T |
12278 |
a |
12278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 5910 - 5990
Alignment:
| Q |
101 |
agttccaaagagtttgaagaattgctctagcattattaggattagacttgaacaaaaccaacttactggaaatataacaga |
181 |
Q |
| |
|
||||||||||||||| || |||||||| ||| ||| || | |||||| ||||||||||||| |||| |||||||||||| |
|
|
| T |
5910 |
agttccaaagagtttaaaaaattgctcaagccttaagagagtgagacttcaacaaaaccaactgactgcaaatataacaga |
5990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 12821 - 12921
Alignment:
| Q |
81 |
aataaccacttcacaggctcagttccaaagagtttgaagaattgctctagcattattaggattagacttgaacaaaaccaacttactggaaatataacag |
180 |
Q |
| |
|
||||| || |||||||| | |||||||| |||||||||||||||||| ||| ||||||| |||| ||| || |||| ||| | |||||||||||||||| |
|
|
| T |
12821 |
aataatcatttcacaggattagttccaatgagtttgaagaattgctccagccttattagagttaggcttcaaaaaaatcaattaactggaaatataacag |
12920 |
T |
|
| Q |
181 |
a |
181 |
Q |
| |
|
| |
|
|
| T |
12921 |
a |
12921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 6554 - 6634
Alignment:
| Q |
101 |
agttccaaagagtttgaagaattgctctagcattattaggattagacttgaacaaaaccaacttactggaaatataacaga |
181 |
Q |
| |
|
||||||||||||||| || |||||||| ||| ||| || | |||||| ||||||||||||| |||| |||||||||||| |
|
|
| T |
6554 |
agttccaaagagtttaaaaaattgctcaagccttaagagagtgagacttcaacaaaaccaactgactgcaaatataacaga |
6634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 18809 - 18750
Alignment:
| Q |
101 |
agttccaaagagtttgaagaattgctctagcattattaggattagacttgaacaaaacca |
160 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||| |||| |||||||| ||||| |
|
|
| T |
18809 |
agttccaaaaagtttgaagaattgctctagccttattagacttaggcttgaacataacca |
18750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University