View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1994_low_18 (Length: 238)
Name: NF1994_low_18
Description: NF1994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1994_low_18 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 4971432 - 4971652
Alignment:
| Q |
18 |
cttctgttagaatatgcatttttctaacaaatatgcattttttaaaaggaaatcatctttcaatgtaggattctgttatatatagtactattagatagat |
117 |
Q |
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| T |
4971432 |
cttctgttagaatatgcatttttctaacaaatgtgcattttttaaaaggaaatcatctttcaatgtaggattctgttatatatagtactattagatagat |
4971531 |
T |
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| Q |
118 |
accataaatttaattttgtgtgcaggatcttgttaccttgactactaccatttatgtcaataaataaactgagttagtaaaaaacattaatgagggttac |
217 |
Q |
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| T |
4971532 |
accataaatttaattttgtgtgcaggatcttgttaccttgactactaccatttatgtcaataaataaactgagttagtaaaaaacattaatgagggttac |
4971631 |
T |
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| Q |
218 |
ttgttttaattccctatattt |
238 |
Q |
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||||||||||||||||||||| |
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| T |
4971632 |
ttgttttaattccctatattt |
4971652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 4989341 - 4989560
Alignment:
| Q |
18 |
cttctgttagaatatgcatttttctaacaaatatgcattttttaaaaggaaatcatctttcaatgtaggattctgttatatatagtactattagatagat |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4989341 |
cttctgttagaatatgcatttttctaacaaatgtgcattttttaaaaggaaatcatctttcaatgtaggattctgttatatatagtactattagatagat |
4989440 |
T |
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| Q |
118 |
accataaatttaattttgtgtgcaggatcttgttaccttgactactaccatttatgtcaataaataaactgagttagtaaaaaacattaatgagggttac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4989441 |
accataaatttaattttgtgtgcaggatcttgttaccttgactactaccatttatgtcaataaataaactgagttagt-aaaaacattaatgagggttac |
4989539 |
T |
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| Q |
218 |
ttgttttaattccctatattt |
238 |
Q |
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||||||||||||||||||||| |
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| T |
4989540 |
ttgttttaattccctatattt |
4989560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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