View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1994_low_2 (Length: 530)
Name: NF1994_low_2
Description: NF1994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1994_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 477
Target Start/End: Original strand, 6881344 - 6881804
Alignment:
| Q |
17 |
acttatgagacatttaacaacaaatttaattctacaattggtttcttgtaaaaactgataatgttcttttaatagaattcagcgtagtatatgatgtttt |
116 |
Q |
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| T |
6881344 |
acttatgagacatttaacaacaaatttaattctacaattggtttcttgtaaaaactgataacgttcttttaatagaattcagcgtagtatatgatgtttt |
6881443 |
T |
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| Q |
117 |
taacaatataaagtgaagaaggaaaaaatatttatcacaaaaagggnnnnnnnnntggctacaatattgatgtttatttatgccatggtcctttttgtat |
216 |
Q |
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| T |
6881444 |
taacaatataaagtgaagaaggaaaaaatatttatcacaaaaagggaaaaaaga-tggctagaatattgatgtttatttatgccatggtcctttttgtat |
6881542 |
T |
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| Q |
217 |
ttcttgttgtaatcaaagtcggtggtaagccctttttctcaccatcttcaaatttttcttatttacctttacacagaatatttcattagattg--tatta |
314 |
Q |
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| T |
6881543 |
ttcttgttgtaatcaaagtcggtggtaagccctttttctcaccatcttcaaaaaaaaattatttacctttacaca-aatatttcattagattgtgtatta |
6881641 |
T |
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| Q |
315 |
atgttcnnnnnnnnnnnnnnnnnnnnnncaattagcagcttctcgtaattgcgaacttgactctgattgtccaaattatttgtgttaccctcctaaagtt |
414 |
Q |
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| T |
6881642 |
atggtgttttattttatatttattttttcaattagcagcttctcgtaattgcgaacttgactctgattgtccaaattatttgtgttaccctcctaaagtt |
6881741 |
T |
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| Q |
415 |
gggaagtgttattttcataattgttactgcaattaacaagtaagttgaataattatttcgttt |
477 |
Q |
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| T |
6881742 |
gggaagtgttattttcataattgttactgcaattaacaagtaagttgaataattatttcgttt |
6881804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 518
Target Start/End: Original strand, 6881821 - 6881850
Alignment:
| Q |
489 |
ttttaaggatatttcgtttcttttgtaatc |
518 |
Q |
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| T |
6881821 |
ttttaaggatatttcgtttcttttgtaatc |
6881850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 478
Target Start/End: Original strand, 1779058 - 1779155
Alignment:
| Q |
381 |
ttgtccaaattatttgtgttaccctcctaaagttgggaagtgttattttcataattgttactgcaattaacaagtaagttgaataattatttcgtttc |
478 |
Q |
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| T |
1779058 |
ttgtccaaattatttgtgttcggatcctaaagttggaaaatgtatttataataattgttactgcatttaatagttaagttcaaaaataatttcgtttc |
1779155 |
T |
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