View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1994_low_21 (Length: 234)
Name: NF1994_low_21
Description: NF1994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1994_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 31417959 - 31417757
Alignment:
| Q |
14 |
aatataaaagtaaccaagaaacaatataaaaatttcacatatgctttcattacattatatatagatagattagttattccccttnnnnnnnntatagaga |
113 |
Q |
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| T |
31417959 |
aatataaaagtaaccaagaaacaatataaaaatttcacatatgctttcattacattatatatagatagattagttattccccttaaaaaaaa-atagaga |
31417861 |
T |
|
| Q |
114 |
ttagttatataatatgatgatcattatgcatataggacacgtagtgacattataaacttaattagcaaacagcacatgcttagctcacttatttttgtac |
213 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31417860 |
ttagttata--atatgatgatcattatgcatataggacacgtagtgacattataaacttaattagcaaacagcacatgctgagctcacttatttttgtac |
31417763 |
T |
|
| Q |
214 |
atttgt |
219 |
Q |
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|||||| |
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| T |
31417762 |
atttgt |
31417757 |
T |
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