View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1994_low_6 (Length: 361)
Name: NF1994_low_6
Description: NF1994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1994_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 357
Target Start/End: Original strand, 45459137 - 45459481
Alignment:
| Q |
13 |
aatattcaaaatgtgtgtgtcatgttcttcattgacaatgatgttcttaattttactaataataatgttgtttcccttatctataacctgttttgacata |
112 |
Q |
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| T |
45459137 |
aatattcaaaatgtgtgtgtcatgttcttcattgacaatgatgttcttaattttactaataataatgttgtttcccttatctataacctgttttgacata |
45459236 |
T |
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| Q |
113 |
acaaaaatattgtcccagtaccctgcatacagcagttacagcaactacctcacccaaacccaactagcaaccgaaataaactcgagacaaacgataacag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45459237 |
acaaaaatattgtcccagtaccctgcatacagcagttacagcaactacctcacccaaacccaactagcaaccgaaataaactcgagacaaacgataacag |
45459336 |
T |
|
| Q |
213 |
ttcttgcagtcgataacagtgggatggcacctatctcaggaaaaccaatggatgtgatcaagaaggtgttaagcatccacgtaatcctcgactactttga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45459337 |
ttcttgcagtcgataacagtgggatggcacctatctcaggaaaaccaatggatgtgatcaagaaggtgttaagcatccacgtcatcctcgactactttga |
45459436 |
T |
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| Q |
313 |
tgttcaacaattcaagcacatgggaaatcaaaccataactgtcag |
357 |
Q |
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||||||| ||||| ||||||||||||||||| | ||||||||||| |
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| T |
45459437 |
tgttcaaaaattccagcacatgggaaatcaacctataactgtcag |
45459481 |
T |
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