View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1994_low_7 (Length: 356)

Name: NF1994_low_7
Description: NF1994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1994_low_7
NF1994_low_7
[»] chr3 (4 HSPs)
chr3 (6-356)||(23331370-23331720)
chr3 (177-252)||(16020039-16020114)
chr3 (298-353)||(15387052-15387107)
chr3 (298-356)||(13957631-13957689)
[»] chr6 (3 HSPs)
chr6 (176-251)||(9343890-9343966)
chr6 (176-205)||(12639080-12639109)
chr6 (176-205)||(21302338-21302367)
[»] chr8 (3 HSPs)
chr8 (177-252)||(18445617-18445692)
chr8 (176-205)||(17462924-17462953)
chr8 (176-205)||(18774861-18774890)
[»] chr7 (4 HSPs)
chr7 (176-251)||(16156477-16156553)
chr7 (176-251)||(22708378-22708454)
chr7 (176-205)||(21369178-21369207)
chr7 (177-224)||(24462057-24462105)
[»] chr5 (2 HSPs)
chr5 (176-205)||(22821854-22821883)
chr5 (176-205)||(22822214-22822243)
[»] chr4 (1 HSPs)
chr4 (176-205)||(11475133-11475162)
[»] chr1 (1 HSPs)
chr1 (176-205)||(37259897-37259926)
[»] scaffold0308 (1 HSPs)
scaffold0308 (177-252)||(16450-16525)


Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 6 - 356
Target Start/End: Complemental strand, 23331720 - 23331370
Alignment:
Q  6 actttattaggatcagatatagcattgtgattataatatcaactcaccacaaatagtagtcagcaccattttctccctctaatgaattctccttgattgc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23331720 actttattaggatcagatatagcattgtgattataatatcaactcaccacaaatagtagtcagcaccattttctccctctaatgaattctccttgattgc 23331621  T
Q  106 tttgcactcctcttgcttaagaactttatttgcagtagaaacaaatacatcacacgccatttatgacttcgaagctttaaaatggattaaacacacaaaa 205  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23331620 tttgcactcctcttgcttaagaactttatttgcattagaaacaaatacatcacacgccatttataacttcgaagctttaaaatggattaaacacacaaaa 23331521  T
Q  206 attcaagtttagtgtttttcggccgaaattgatcccttacacttttactacgtcataattcaaatnnnnnnngagagaagttggccatgttgaaagtagc 305  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||       ||||||||| |||||||||| |||||||    
T  23331520 attcaagtttaatgtttttcggctgaaattgatcccttacacttttgctacgtcataattcaaataaaaaaagagagaagtcggccatgttggaagtagc 23331421  T
Q  306 acttaccccatattcacctggaagttcgattttgaaggcattgtcattaat 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23331420 acttaccccatattcacctggaagttcgattttgaaggcattgtcattaat 23331370  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 16020039 - 16020114
Alignment:
Q  177 aagctttaaaatggattaaacacac-aaaaattcaagtttagtgtttttcggccgaaattgatcccttacactttta 252  Q
    |||||||||||||||| |||||||| | ||||||||  ||||||||||| ||||  ||||| |||||||||||||||    
T  16020039 aagctttaaaatggataaaacacactagaaattcaaaattagtgttttt-ggccagaattggtcccttacactttta 16020114  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 15387107 - 15387052
Alignment:
Q  298 aaagtagcacttaccccatattcacctggaagttcgattttgaaggcattgtcatt 353  Q
    ||||||| |||||| ||||| |||||||||||||| |||||| | |||||||||||    
T  15387107 aaagtagtacttactccatactcacctggaagttctattttgtaagcattgtcatt 15387052  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 356
Target Start/End: Original strand, 13957631 - 13957689
Alignment:
Q  298 aaagtagcacttaccccatattcacctggaagttcgattttgaaggcattgtcattaat 356  Q
    ||||||| |||||| ||||| |||||||||||||| || ||| | ||||||||||||||    
T  13957631 aaagtagtacttactccatactcacctggaagttctatcttgtaagcattgtcattaat 13957689  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 9343966 - 9343890
Alignment:
Q  176 gaagctttaaaatggattaaacacacaaaa-attcaagtttagtgtttttcggccgaaattgatcccttacactttt 251  Q
    |||||||||||||||||||||||||||||| |  ||   ||||||||||| |||| |||||| ||||||||||||||    
T  9343966 gaagctttaaaatggattaaacacacaaaataaccacacttagtgtttttgggccaaaattggtcccttacactttt 9343890  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 12639109 - 12639080
Alignment:
Q  176 gaagctttaaaatggattaaacacacaaaa 205  Q
    ||||||||||||||||||||||||||||||    
T  12639109 gaagctttaaaatggattaaacacacaaaa 12639080  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 21302338 - 21302367
Alignment:
Q  176 gaagctttaaaatggattaaacacacaaaa 205  Q
    ||||||||||||||||||||||||||||||    
T  21302338 gaagctttaaaatggattaaacacacaaaa 21302367  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 18445692 - 18445617
Alignment:
Q  177 aagctttaaaatggattaaacacac-aaaaattcaagtttagtgtttttcggccgaaattgatcccttacactttta 252  Q
    |||||||||||||||| |||||||| | ||||||||  ||||||||||| ||||  ||||| |||||||||||||||    
T  18445692 aagctttaaaatggataaaacacactagaaattcaaacttagtgttttt-ggccagaattggtcccttacactttta 18445617  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 17462924 - 17462953
Alignment:
Q  176 gaagctttaaaatggattaaacacacaaaa 205  Q
    ||||||||||||||||||||||||||||||    
T  17462924 gaagctttaaaatggattaaacacacaaaa 17462953  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 18774861 - 18774890
Alignment:
Q  176 gaagctttaaaatggattaaacacacaaaa 205  Q
    ||||||||||||||||||||||||||||||    
T  18774861 gaagctttaaaatggattaaacacacaaaa 18774890  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 16156553 - 16156477
Alignment:
Q  176 gaagctttaaaatggattaaacacacaaaa-attcaagtttagtgtttttcggccgaaattgatcccttacactttt 251  Q
    |||||||||||||||||||||||||||||| |  ||   ||||||||||| |||| |||||| || |||||||||||    
T  16156553 gaagctttaaaatggattaaacacacaaaataaccatacttagtgtttttgggccaaaattggtctcttacactttt 16156477  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 22708378 - 22708454
Alignment:
Q  176 gaagctttaaaatggattaaacacacaaaa-attcaagtttagtgtttttcggccgaaattgatcccttacactttt 251  Q
    |||||||||||||||||||||||||||||| |  ||   ||  ||||||| |||| |||||||||||||||||||||    
T  22708378 gaagctttaaaatggattaaacacacaaaataaccatacttgttgtttttgggccaaaattgatcccttacactttt 22708454  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 21369178 - 21369207
Alignment:
Q  176 gaagctttaaaatggattaaacacacaaaa 205  Q
    ||||||||||||||||||||||||||||||    
T  21369178 gaagctttaaaatggattaaacacacaaaa 21369207  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 24462105 - 24462057
Alignment:
Q  177 aagctttaaaatggattaaacacacaaa-aattcaagtttagtgttttt 224  Q
    ||||||||||||| ||||||||||||||  |||||| ||||||||||||    
T  24462105 aagctttaaaatgcattaaacacacaaattattcaaatttagtgttttt 24462057  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 22821854 - 22821883
Alignment:
Q  176 gaagctttaaaatggattaaacacacaaaa 205  Q
    ||||||||||||||||||||||||||||||    
T  22821854 gaagctttaaaatggattaaacacacaaaa 22821883  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 22822214 - 22822243
Alignment:
Q  176 gaagctttaaaatggattaaacacacaaaa 205  Q
    ||||||||||||||||||||||||||||||    
T  22822214 gaagctttaaaatggattaaacacacaaaa 22822243  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 11475162 - 11475133
Alignment:
Q  176 gaagctttaaaatggattaaacacacaaaa 205  Q
    ||||||||||||||||||||||||||||||    
T  11475162 gaagctttaaaatggattaaacacacaaaa 11475133  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 37259926 - 37259897
Alignment:
Q  176 gaagctttaaaatggattaaacacacaaaa 205  Q
    ||||||||||||||||||||||||||||||    
T  37259926 gaagctttaaaatggattaaacacacaaaa 37259897  T

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Target: scaffold0308 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 16525 - 16450
Alignment:
Q  177 aagctttaaaatggattaaacacac-aaaaattcaagtttagtgtttttcggccgaaattgatcccttacactttta 252  Q
    |||||||||||||||| |||||||| | ||||||||  ||||||||||| ||||  ||||| | |||||||||||||    
T  16525 aagctttaaaatggataaaacacactataaattcaaacttagtgttttt-ggccataattggttccttacactttta 16450  T

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