View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1994_low_8 (Length: 344)

Name: NF1994_low_8
Description: NF1994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1994_low_8
NF1994_low_8
[»] chr2 (3 HSPs)
chr2 (1-109)||(42898609-42898717)
chr2 (282-333)||(42898371-42898422)
chr2 (169-211)||(42898504-42898546)
[»] chr8 (1 HSPs)
chr8 (282-329)||(5788725-5788772)
[»] chr1 (1 HSPs)
chr1 (282-329)||(28496108-28496155)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 9e-55; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 42898717 - 42898609
Alignment:
Q  1 aactccgaagcataacttttgtcaaaaatattacaatgtgattctaaatgattctgataaattcaccatcaatctaagcatgcactaacaactagagaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42898717 aactccgaagcataacttttgtcaaaaatattacaatgtgattctaaatgattctgataaattcaccatcaatctaagcatgcactaacaactagagaga 42898618  T
Q  101 tagtacatt 109  Q
    |||||||||    
T  42898617 tagtacatt 42898609  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 282 - 333
Target Start/End: Complemental strand, 42898422 - 42898371
Alignment:
Q  282 ccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggtt 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42898422 ccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggtt 42898371  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 42898546 - 42898504
Alignment:
Q  169 atctagctaggtacctgctcctatatcaatatatatcaatgta 211  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  42898546 atctagctaggtacctgctcctagatcaatatatatcaatgta 42898504  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 5788725 - 5788772
Alignment:
Q  282 ccttgagaagagggttccacagtcacatctgtattctcttgtgccaca 329  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||    
T  5788725 ccttgagaagagggttccacagtcacatctatattctctagtgccaca 5788772  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 28496108 - 28496155
Alignment:
Q  282 ccttgagaagagggttccacagtcacatctgtattctcttgtgccaca 329  Q
    ||||||||||||||| |||||||||||| ||||||||||||| |||||    
T  28496108 ccttgagaagagggtgccacagtcacatttgtattctcttgtaccaca 28496155  T

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