View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1994_low_9 (Length: 324)
Name: NF1994_low_9
Description: NF1994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1994_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 50229126 - 50228821
Alignment:
| Q |
1 |
ttgctttgcccgggagggggtgggaaggaggaaacaattaaggatannnnnnnaggttgtgaagtttttagtaatgtttggaatggcgtttgtcggtggt |
100 |
Q |
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| T |
50229126 |
ttgctttgcccgggagggggtgggaaggaggaaacaattaaggatatttttttaggttgtgaagtttttagtaatgtttggaatggcgtttgtcggtggt |
50229027 |
T |
|
| Q |
101 |
tgggtattgttttgtgaacccagttgacattggagagcatgctttacaattttgtggtgcttacttgtttagaaaggaattttgtatgtgttttcaggca |
200 |
Q |
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| T |
50229026 |
tgggtattgttttgtgaacccagttgacattggagagcatgcttta-aattttgtggtgcttacttgtttagaaaggaattttgtatgtgttttcaggca |
50228928 |
T |
|
| Q |
201 |
atttggatgacatgtatttgaattatttggaaagaacataattcaagaattttttgtaggaaataagaatctttcaagcagctattggatcgtatcaaac |
300 |
Q |
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| T |
50228927 |
atttggatgacatgtatttgaattatttggaaagaacataattcaagaattttttgtaggaaataagaatctttcaagcagctattggatcgtatcaaac |
50228828 |
T |
|
| Q |
301 |
tccaatc |
307 |
Q |
| |
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||||||| |
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| T |
50228827 |
tccaatc |
50228821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 58 - 193
Target Start/End: Complemental strand, 39380798 - 39380661
Alignment:
| Q |
58 |
tgtgaagtttttagtaatgtttggaatggcgtttgtcggtggttgggta-ttgttttgtgaacccagttgacattggagagcatgctttacaa-ttttgt |
155 |
Q |
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| T |
39380798 |
tgtgatgtttttagtaatgtttggaatggtgtttttcgatggttgggtatttgttttgagaatccaattgacaatggagagcttgctctacaatttttgt |
39380699 |
T |
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| Q |
156 |
ggtgcttacttgtttagaaaggaattttgtatgtgttt |
193 |
Q |
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| T |
39380698 |
ggtgcttatatgttcagaaagggaatttgtatgtgttt |
39380661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 39380630 - 39380590
Alignment:
| Q |
268 |
aatctttcaa-gcagctattggatcgtatcaaactccaatc |
307 |
Q |
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| T |
39380630 |
aatctttcaaagcagctattggatcgtatcaaacttcaatc |
39380590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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