View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19950_high_1 (Length: 576)
Name: NF19950_high_1
Description: NF19950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19950_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 12 - 558
Target Start/End: Complemental strand, 26516626 - 26516082
Alignment:
| Q |
12 |
aagcaaagggaatacatgctagatgatgcatataataagtacgtgtttgatgaccagggattgccgaagtggtttctcgatgaggaaaggaaataccgtg |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26516626 |
aagcaaagggaatacatgctagatgatgcatataataagtatgtgtttgatgaccagggattgccgaagtggtttctcgatgaggaaaggaaacaccgtg |
26516527 |
T |
|
| Q |
112 |
taccagttaagcctatcacgaaagagcaagttgctgcaatgaaagcccaatttaaagaaattgatactcggcctgcaaagaaggtggctgaggccaaagc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26516526 |
taccagttaagcctatcacgaaagagcaagttgctgcaatgaaagcccaatctaaagaaatt-atactcggcctgcaaagaaggtggctgaggccaaagc |
26516428 |
T |
|
| Q |
212 |
acgcaagaagcgtgttgctatgaggaagattgagaaaatacgcaagaaggccaatgctatatcagatcagtcagacatatccaatcgttcaaagagtaag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26516427 |
acgcaagaagcgtgttgctatgaggaagattgagaaaatacgcaagaaggccaatgctatatcagatcagtcagacatatccgatcgttcaaagagtaag |
26516328 |
T |
|
| Q |
312 |
caaattgatcgactatatnnnnnnngctgttccaaaaaggcctcagaaggagtatgtagttgcaaagaaaggtgtccaagttaagactggcaggggaaaa |
411 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26516327 |
caaattgatcgactatataaaaaat-ctgttccaaaaaggcctcagaaggagtatgtagttgcaaagaaaggtgtccaagttaagactggcaggggaaaa |
26516229 |
T |
|
| Q |
412 |
gtccttgttgatcgcaggatgaagaaggatgtgaggaaaaatggaattggtaaggcaggcaaaagaggttccaatgcaaagggcaaggcaccaaagggtg |
511 |
Q |
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| T |
26516228 |
gtccttgttgatcgcaggatgaagaagaatatgaggaaaaatggaattggtaaggcaggcaaaagaggttccaatgcaaagggaaaggcaccaaagggtg |
26516129 |
T |
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| Q |
512 |
gcagggctccgaatggcaagatccctatgggaaaaggatcttcaaag |
558 |
Q |
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| T |
26516128 |
gcagggctccgattggaaagatccctatgggaaaaggatcttcaaag |
26516082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 514
Target Start/End: Complemental strand, 30373087 - 30372583
Alignment:
| Q |
12 |
aagcaaagggaatacatgctagatgatgcatataataagtacgtgtttgatgaccagggattgccgaagtggtttctcgatgaggaaaggaaataccgtg |
111 |
Q |
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|||||||||||| | ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||| |
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| T |
30373087 |
aagcaaagggaacagatgctagatgatgcatataataaatacatgtttgatgaccagggattgcccaagtggtttctcgatgaggaaagaaaacaccgtg |
30372988 |
T |
|
| Q |
112 |
taccagttaagcctatcacgaaagagcaagttgctgcaatgaaagcccaatttaaagaaattgatactcggcctgcaaagaaggtggctgaggccaaagc |
211 |
Q |
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|||||||||||||| |||| |||||| |||||||||| ||||| || |||||||||| |||||||||| | ||||||||||||||||||||||||||||| |
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| T |
30372987 |
taccagttaagcctgtcacaaaagaggaagttgctgctatgaaggcacaatttaaagcaattgatactagacctgcaaagaaggtggctgaggccaaagc |
30372888 |
T |
|
| Q |
212 |
acgcaagaagcgtgttgctatgaggaagattgagaaaatacgcaagaaggccaatgctatatcagatcagtcagacatatccaatcgttcaaagagtaag |
311 |
Q |
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||| |||||||||||||| |||||||||||||||||| | |||||||||||||| ||||||||||||||| |||||||||| ||||||| ||||||||| |
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| T |
30372887 |
acgaaagaagcgtgttgcaatgaggaagattgagaaagtccgcaagaaggccaacgctatatcagatcagccagacatatctgatcgttccaagagtaag |
30372788 |
T |
|
| Q |
312 |
caaattgatcgactatatnnnnnnngctgttccaaaaaggcctcagaaggagtatgtagttgcaaagaaaggtgtccaagttaagactggcaggggaaaa |
411 |
Q |
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|||||||| ||||| ||| || ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||| | ||||||| |
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| T |
30372787 |
caaattgaccgactctat-aaaaacgcagttccaaaaaggcctcaaaaggagtatgtaactgcaaagaaaggtgtccaagttaaggctggtaagggaaaa |
30372689 |
T |
|
| Q |
412 |
gtccttgttgatcgcaggatgaagaaggatgtgaggaaaaatggaattggtaaggcaggcaaaagaggttccaatgcaaag---ggcaaggcaccaaagg |
508 |
Q |
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||||||||||||||||||||||||| |||| |||||||| ||| || ||||||| |||||||||||||||||| |||||| |||||||||||||||| |
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| T |
30372688 |
gtccttgttgatcgcaggatgaagagtgatgcgaggaaaagtggtatgggtaagggaggcaaaagaggttccaaggcaaagggcggcaaggcaccaaagg |
30372589 |
T |
|
| Q |
509 |
gtggca |
514 |
Q |
| |
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| |||| |
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| T |
30372588 |
gcggca |
30372583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 531
Target Start/End: Complemental strand, 30372586 - 30372548
Alignment:
| Q |
493 |
ggcaaggcaccaaagggtggcagggctccgaatggcaag |
531 |
Q |
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||||||||||||||||||||||||||||| | ||||||| |
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| T |
30372586 |
ggcaaggcaccaaagggtggcagggctccaagtggcaag |
30372548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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