View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19950_high_10 (Length: 256)
Name: NF19950_high_10
Description: NF19950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19950_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 51130591 - 51130398
Alignment:
| Q |
9 |
gaagaaaatgacccatgaggtatgattaaatggcacgcgcacacacccaacactcaccacctacttattcattggaaaaaatgcactcacctaccctcat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51130591 |
gaagaaaatgacccatgaggtatgattaaatggcacgcgcacacacccaacactcaccacctacttattcattggaaaaaatgcactcacctaccctcat |
51130492 |
T |
|
| Q |
109 |
ttatgtttaaatgacagacagatcttctctaatttgtagtgagtgtaattgagctattctcaaaatataaaatatgaatgacagttgggtaaca |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
51130491 |
gtatgtttaaatgacagacagatcttctctaatttgtagtgagtgtaattgagctattctcaaaatataaaatatgcatgacagttgggtaaca |
51130398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 51130373 - 51130334
Alignment:
| Q |
201 |
caatagcatagagtcataaacaattagattgaaagattgt |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51130373 |
caatagcatagagtcataaacaattagattgaaagattgt |
51130334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University