View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19950_high_4 (Length: 370)
Name: NF19950_high_4
Description: NF19950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19950_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 51181704 - 51181350
Alignment:
| Q |
1 |
gaagctgtgactgctgcaacagcggcagcaacaccaactacagatactgcggcgtgcaactgagcgttatgagtcctgatttcctgttttttcctctcct |
100 |
Q |
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| T |
51181704 |
gaagctgtgactgctgcaacagcggcagcaacaccaactacagatactgcggcgtgcaactgagcgttatgagtcctgatttcctgttttttcctctcct |
51181605 |
T |
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| Q |
101 |
tctgatctttcaaccacctacccgtagtcctccctcttatcaagctcctgtaaagctgatgagcgaaaatttgcacaaaatattaatgaaaatagttaca |
200 |
Q |
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| T |
51181604 |
tctgatctttcaaccacctccccgtagtcctccctcttatcaagctcctgtaaagctgatgagcgaaaatttgcacaaaatattaatgaaaatagttaca |
51181505 |
T |
|
| Q |
201 |
gattgagcagttatctgattataattgatgaatataatcacaagttgaatggaagataccccatttctcagcaagttttgattggaaaggaattctggag |
300 |
Q |
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| T |
51181504 |
gattgagcagttatctgattataattgatgaatataatcacaagttgaatggaagataccccatttctcagcaagttttgattggaaaggaattctggag |
51181405 |
T |
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| Q |
301 |
aaagtgcttggtgaagtaaaaataattcctgcatatgaacgattactatgttatt |
355 |
Q |
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| T |
51181404 |
aaagtgcttggtgaagtaaaaataattcctgcatatgaacgattactatgttatt |
51181350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 10 - 347
Target Start/End: Original strand, 14180972 - 14181309
Alignment:
| Q |
10 |
actgctgcaacagcggcagcaacaccaactacagatactgcggcgtgcaactgagcgttatgagtcctgatttcctgttttttcctctccttctgatctt |
109 |
Q |
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| T |
14180972 |
actgctgcaacagcggcagcaacaccaactacagatactgtggcgtgcaactgagcattatgagtcctgatttcctgttttttcctctccttctgatctt |
14181071 |
T |
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| Q |
110 |
tcaaccacctacccgtagtcctccctcttatcaagctcctgtaaagctgatgagcgaaaatttgcacaaaatattaatgaaaatagttacagattgagca |
209 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
14181072 |
tcaaccacctacccgtagtcctccctcttattaagctcctgtaaagctgatgagcaaaaatttgcacaaaaaattaacgaaaatagttacagattgagca |
14181171 |
T |
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| Q |
210 |
gttatctgattataattgatgaatataatcacaagttgaatggaagataccccatttctcagcaagttttgattggaaaggaattctggagaaagtgctt |
309 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14181172 |
tttatctgattataattgatgaatataatcacatgttgaatgcaagataccccatttctcagcaagttttggctggaaaggaattctggagaaagtgctt |
14181271 |
T |
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| Q |
310 |
ggtgaagtaaaaataattcctgcatatgaacgattact |
347 |
Q |
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|||||||||||||||| ||||||||||||| ||||||| |
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| T |
14181272 |
ggtgaagtaaaaataaatcctgcatatgaatgattact |
14181309 |
T |
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