View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19950_low_3 (Length: 404)
Name: NF19950_low_3
Description: NF19950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19950_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 11357122 - 11356912
Alignment:
| Q |
1 |
taaatacataccagatattattcttgatctaattttatttaacctaattcaggcacatccatgctgattttgatagtgagaactattttatcttgtatac |
100 |
Q |
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| T |
11357122 |
taaatacataccagatattattcttgatctaattttatttaacctagttcaggcacatccatgttgattttgatagtgagaactattttatcttgtatac |
11357023 |
T |
|
| Q |
101 |
ctaatgatattgatattgcaatagaatctattttttaatgacacaaccctagtatagccattataacaggcttagattcatggcatcatggttgaatgct |
200 |
Q |
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| T |
11357022 |
ctaatgatattgatattgcaatagaatctattttttaatgacacaaccctagtatagccattataacaggcttagattcatggcatcatggttgaatgct |
11356923 |
T |
|
| Q |
201 |
tctataattca |
211 |
Q |
| |
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|||| |||||| |
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| T |
11356922 |
tctacaattca |
11356912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 11341440 - 11341246
Alignment:
| Q |
14 |
gatattattcttgatctaattttatttaacctaattcaggcacatccatgctgattttgatagtgagaactattttatcttgtatacctaatgatattga |
113 |
Q |
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|||||||| |||||||||||||| |||| |||| |||| ||||||||||| ||||||||||||||||||||||||||| | ||| || ||| |||||||| |
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| T |
11341440 |
gatattatgcttgatctaattttgtttaccctagttcaagcacatccatgttgattttgatagtgagaactattttat-tcgtacacttaacgatattga |
11341342 |
T |
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| Q |
114 |
tattgcaatagaatctattttttaatgacacaacc---ctagtatagccattataacaggcttagattcatggcatcatggttgaatgcttctata |
206 |
Q |
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| T |
11341341 |
tattgcaatagaatctatttttaaatgacacaaccatggtattatagtcagtacaacaggctcagattaatggcatcatggttgaatgctgctata |
11341246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 323 - 392
Target Start/End: Complemental strand, 11356799 - 11356731
Alignment:
| Q |
323 |
aattataggtctgcatactcccatcatggtaggaaaaaggaagtatggtaggaaaatctatccttgatga |
392 |
Q |
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| T |
11356799 |
aattataggtctgcatactccaatcatggcaggaaaa-ggaagtatggtaggaaaatctatccttgatga |
11356731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 5758015 - 5757955
Alignment:
| Q |
13 |
agatattattcttgatctaattttatttaacctaattcaggcacatccatgctgattttga |
73 |
Q |
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| T |
5758015 |
agatattcttcttgatctgattttatgtagcccagttcaagcacatccatgctgactttga |
5757955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 24022607 - 24022664
Alignment:
| Q |
102 |
taatgatattgatattgcaatagaatctattttttaatgacacaaccctagtatagcc |
159 |
Q |
| |
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|
| T |
24022607 |
taatgatattgatattgcaatagaatctattgtttaatgacacaaccgtggtatagcc |
24022664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 21526876 - 21526753
Alignment:
| Q |
15 |
atattattcttgatctaattttatttaacctaattcaggcacatccatgctgattttgatagtgagaactattttatcttgtatacctaatgatattgat |
114 |
Q |
| |
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||||||||||||||||| | |||||| |||| ||| | | ||||||| | ||||||| ||| |||| ||||||| |||||||||| ||||||||||| |
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| T |
21526876 |
atattattcttgatctagtcgtatttatcctagttccagaatatccatgttaattttgaaagtaagaatcattttat-ttgtatacctgatgatattgat |
21526778 |
T |
|
| Q |
115 |
attgcaatagaatctattttttaat |
139 |
Q |
| |
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|||| |||| |||| || ||||||| |
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| T |
21526777 |
attgaaataaaatcaatgttttaat |
21526753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 196
Target Start/End: Complemental strand, 21531232 - 21531097
Alignment:
| Q |
57 |
atccatgctgattttgatagtgagaactattttatcttgtatacctaatgatattgatattgcaatagaatctattttttaatgacacaaccctagtata |
156 |
Q |
| |
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||||||| ||||||||| |||||||| ||||||| |||||||| | ||||||||||||||| |||| |||| | |||||| | | |||||||| ||| |
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| T |
21531232 |
atccatgttgattttgaaagtgagaatcattttat-ttgtatacttgatgatattgatattgaaataaaatcaaatttttagtta---aaccctagcata |
21531137 |
T |
|
| Q |
157 |
gc-cattataacaggcttagattcatggcatcatggttgaa |
196 |
Q |
| |
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|| ||| ||| | |||||||||||||||||||||||||| |
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| T |
21531136 |
gcatattttaa-tgacttagattcatggcatcatggttgaa |
21531097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 33570091 - 33570210
Alignment:
| Q |
15 |
atattattcttgatctaattttatttaacctaattcaggcacatccatgctgattttgatagtgagaactattttatcttgtatacctaatgatattgat |
114 |
Q |
| |
|
|||||||||||| |||||||||||| | || | |||| | |||||| |||| ||||||| ||||| || | ||||| |||||||||| |||||| |||| |
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| T |
33570091 |
atattattcttggtctaattttattgaccccagttcaagtacatccctgctaattttgaaagtgaaaataaatttat-ttgtataccttatgataatgat |
33570189 |
T |
|
| Q |
115 |
attgcaatagaatctattttt |
135 |
Q |
| |
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||||||||| | ||||||||| |
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| T |
33570190 |
attgcaatatagtctattttt |
33570210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 36340861 - 36340965
Alignment:
| Q |
30 |
taattttatttaacctaattcaggcacatccatgctgattttgatagtgagaactattttatcttgtatacctaatgatattgatattgcaatagaatct |
129 |
Q |
| |
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|||||||||||| || |||||| |||||||| |||| ||||||| ||| ||| | |||||| |||||| | |||||| ||||||||||||||||||| |
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| T |
36340861 |
taattttatttaccccaattcaagcacatccctgctaattttgaacgtgtgaattgttttat-ttgtattctggatgataatgatattgcaatagaatct |
36340959 |
T |
|
| Q |
130 |
attttt |
135 |
Q |
| |
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| |||| |
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|
| T |
36340960 |
actttt |
36340965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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