View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19950_low_5 (Length: 349)
Name: NF19950_low_5
Description: NF19950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19950_low_5 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 2054678 - 2054349
Alignment:
| Q |
18 |
agttcagttaatcttttgcaactgaaattgtctagtctcgtaaagcataattcaaa----aacttagttatgtgagaatcccattcaaaaagttatgtga |
113 |
Q |
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| T |
2054678 |
agttcagttaatctattgcaactgaaattttctagtcttgtaaagcataattcaaagctcaacaaaact---tgagatgc---ttcaaaaagttatgtga |
2054585 |
T |
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| Q |
114 |
caatttcatttattttacgagacacgctcaaaaatctaatttcgctgcaagcaccatctattgataggctccaagagttttgcactacaattgcaattaa |
213 |
Q |
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| T |
2054584 |
caatttcatctattttacgagacacactcaaaaatctaatttctctgcaagcaccatctattgataggctccaagagttttgcactgcaattgcaattaa |
2054485 |
T |
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| Q |
214 |
tatttcaagacacaaaatcatggaagctttgctcaactagaaaggctccaagagataccatatgtcataggcgacttgaaagatttcgttttgctcaact |
313 |
Q |
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| T |
2054484 |
tatttcaagaaacaaaatcatggaagctttgctcaactagaaaggctccaagagataccaaatgtcataggcggcttgaaagatttcgtttttctcaact |
2054385 |
T |
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| Q |
314 |
tctcaaacagctaaccttgaagcactagatctttct |
349 |
Q |
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| T |
2054384 |
tctcaagcaactaaccttgaagcactagatctttct |
2054349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 176 - 349
Target Start/End: Complemental strand, 2119814 - 2119641
Alignment:
| Q |
176 |
gataggctccaagagttttgcactacaattgcaattaatatttcaagacacaa-aatcatggaagctttgctcaactagaaaggctccaagagataccat |
274 |
Q |
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| T |
2119814 |
gataggctccaagagttttgcactacaattgcaattgatatttcaaggaaaaataatcatgcaagctttgctcaactagaaag-ctccatgagataccaa |
2119716 |
T |
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| Q |
275 |
atgtcataggcgacttgaaagatttcgttttgctcaacttctcaaacagctaaccttgaagcactagatctttct |
349 |
Q |
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| T |
2119715 |
aagtcataggcgacttgaaaggtttcgttttgctcaacttctcaaacaactaaccttgaagcactagatctttct |
2119641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 2693004 - 2693060
Alignment:
| Q |
264 |
agagataccatatgtcataggcgacttgaaagatttcgttttgctcaacttctcaaa |
320 |
Q |
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| T |
2693004 |
agagataccacaagtcataggcgacttgaagggtcttgttttgctcaacttgtcaaa |
2693060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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