View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19950_low_6 (Length: 318)
Name: NF19950_low_6
Description: NF19950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19950_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 5 - 301
Target Start/End: Original strand, 39029799 - 39030095
Alignment:
| Q |
5 |
ggtagataattctagtgattttagtgattgattacatatgattgaaaatgtaaatatttttagactgcatataaattatgtccatgttatatatctttta |
104 |
Q |
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| T |
39029799 |
ggtaaatatttctagtgattttggtgattgattacatatgattgaaaatgtaaatatttttagactgcatataaattatgtccatgttatatatctttta |
39029898 |
T |
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| Q |
105 |
tttgtctctannnnnnnnagtgttacttaagactaatgattaaactgcatatcatttttctaggtgacaaatctatgattaagaagagatacatgcattt |
204 |
Q |
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| T |
39029899 |
tttatctctattttttttagtgttacttaagactaatgattaaactgcatatcatttttctaggtgacaaatctatgattaagaagagatacatgcattt |
39029998 |
T |
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| Q |
205 |
gacagaacaaatattgaaggagaatccaagtttttgtgagtttatggcaccttctttggatgcaagacaggacattgtggttgaggaagtaccaaag |
301 |
Q |
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| T |
39029999 |
gacagaacaaatattgaaggagaatccaagtttttgtgagtttatggcaccttctttggatgcaagacaggacattgtggttgaggaagtaccaaag |
39030095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 166 - 301
Target Start/End: Complemental strand, 37863623 - 37863488
Alignment:
| Q |
166 |
aggtgacaaatctatgattaagaagagatacatgcatttgacagaacaaatattgaaggagaatccaagtttttgtgagtttatggcaccttctttggat |
265 |
Q |
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| T |
37863623 |
aggtgataaatctatgattaagaagagatacatgcatttgactgaagagattttgaaggagaatcctagtttatgtgagtatatggcaccttcgttggat |
37863524 |
T |
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| Q |
266 |
gcaagacaggacattgtggttgaggaagtaccaaag |
301 |
Q |
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| T |
37863523 |
gcaagacaggatatggtggttgtggaagtaccaaag |
37863488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 299
Target Start/End: Complemental strand, 37859617 - 37859464
Alignment:
| Q |
145 |
taaactgcatatcatttttctaggtgacaaatctatgattaagaagagatacatgcatttgacagaacaaatattgaaggagaatccaagtttttgtgag |
244 |
Q |
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|||||||||||| |||||| |||||| || || ||||| ||||||||||||||| | ||||||||| | || |||| |||||||||||| | || ||| |
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| T |
37859617 |
taaactgcatatactttttc-aggtgataagtcaatgatcaagaagagatacatgtacttgacagaagagatcctgaaagagaatccaagtgtatgcgag |
37859519 |
T |
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| Q |
245 |
tttatggcaccttctttggatgcaagacaggacattgtggttgaggaagtaccaa |
299 |
Q |
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| T |
37859518 |
tacatggcaccttcattggatgcaagacaagacatggtggttgtggaggtaccaa |
37859464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 285
Target Start/End: Original strand, 5284197 - 5284316
Alignment:
| Q |
166 |
aggtgacaaatctatgattaagaagagatacatgcatttgacagaacaaatattgaaggagaatccaagtttttgtgagtttatggcaccttctttggat |
265 |
Q |
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|||||| ||||||||||| |||| |||||||||| || | |||||| |||| ||||| | ||||| ||| ||||||| | ||||| ||||| |||||| |
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| T |
5284197 |
aggtgataaatctatgatcaagaggagatacatgtatctaacagaagaaattttgaaaaaaaatcctagtgtttgtgaatacatggccccttcattggat |
5284296 |
T |
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| Q |
266 |
gcaagacaggacattgtggt |
285 |
Q |
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| T |
5284297 |
gcaaggcaagacatggtggt |
5284316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 285
Target Start/End: Original strand, 5310286 - 5310405
Alignment:
| Q |
166 |
aggtgacaaatctatgattaagaagagatacatgcatttgacagaacaaatattgaaggagaatccaagtttttgtgagtttatggcaccttctttggat |
265 |
Q |
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|||||| ||||||||||| |||| |||||||||| || | ||||| | || ||||| || ||||| ||| ||||||| | ||||||||||| |||||| |
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| T |
5310286 |
aggtgataaatctatgatcaagaggagatacatgtatctaacagaggagattttgaaagaaaatcctagtgtttgtgaatacatggcaccttcattggat |
5310385 |
T |
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| Q |
266 |
gcaagacaggacattgtggt |
285 |
Q |
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| T |
5310386 |
gcaaggcaagacatggtggt |
5310405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 285
Target Start/End: Original strand, 5315000 - 5315119
Alignment:
| Q |
166 |
aggtgacaaatctatgattaagaagagatacatgcatttgacagaacaaatattgaaggagaatccaagtttttgtgagtttatggcaccttctttggat |
265 |
Q |
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|||||| ||||||||||| |||| |||||||||| || | |||||| |||| ||||| || ||||| ||| ||||||| | ||||| ||||| |||||| |
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| T |
5315000 |
aggtgataaatctatgatcaagaggagatacatgtatctaacagaagaaattttgaaagaaaatcctagtgtttgtgaatacatggccccttcattggat |
5315099 |
T |
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| Q |
266 |
gcaagacaggacattgtggt |
285 |
Q |
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| T |
5315100 |
gctaggcaagacatggtggt |
5315119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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