View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19950_low_7 (Length: 307)
Name: NF19950_low_7
Description: NF19950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19950_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 11729339 - 11729618
Alignment:
| Q |
18 |
ctctctaatctatttctcaatcatggttgtgtgatatccagtgacatgtgttcattcttttgcaaataaattttcagtagcatctgattcaactaactct |
117 |
Q |
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| T |
11729339 |
ctctctattctatttctcaatcatggttgtgtgatatccagtgacatgtgttcattcttttgcaaataaattttcagtagcatctgattcaatttactct |
11729438 |
T |
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| Q |
118 |
ttgatatgattttgttatctcatgacatagactgtttgaaggtagaaagtaatttttaaaattttgttgcctcatatttactttcttaattcaagtttgg |
217 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| || |||||||| |
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| T |
11729439 |
ttaatatgattttgttatctcatgacatagactgtttgaaggtagaaagtaattttaataattttgttgcctcatatttactttcttatttaaagtttgg |
11729538 |
T |
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| Q |
218 |
tttgatttacatcgagagagaggcaagcagttgcctatatattgttactttcgctgccaatgtgaatttagtgtcagcca |
297 |
Q |
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| T |
11729539 |
cttgatttacatcgagagagaggcaagcagttgcctatatattgttactttcactgccaatgtgaatttagtgtcagcca |
11729618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 23739651 - 23739930
Alignment:
| Q |
18 |
ctctctaatctatttctcaatcatggttgtgtgatatccagtgacatgtgttcattcttttgcaaataaattttcagtagcatctgattcaactaactct |
117 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
23739651 |
ctctctattctatttctcaatcatggttgtgtgatatccagtgacatgtgttcattcttttgcaaataaattttcagtagcatctgattcaatttactct |
23739750 |
T |
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| Q |
118 |
ttgatatgattttgttatctcatgacatagactgtttgaaggtagaaagtaatttttaaaattttgttgcctcatatttactttcttaattcaagtttgg |
217 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| || |||||||| |
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| T |
23739751 |
ttaatatgattttgttatctcatgacatagactgtttgaaggtagaaagtaattttaataattttgttgcctcatatttactttcttatttaaagtttgg |
23739850 |
T |
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| Q |
218 |
tttgatttacatcgagagagaggcaagcagttgcctatatattgttactttcgctgccaatgtgaatttagtgtcagcca |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23739851 |
cttgatttacatcgagagagaggcaagcagttgcctatatattgttactttcactgccaatgtgaatttagtgtcagcca |
23739930 |
T |
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