View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19950_low_8 (Length: 286)
Name: NF19950_low_8
Description: NF19950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19950_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 51181674 - 51181952
Alignment:
| Q |
1 |
ttgctgccgctggtgcagcagtcacagcttcaatagcatcatccgaaaagcctaatcccaaccaaaagaaacctatcatggcttctgctgcaattgcatc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
51181674 |
ttgctgccgctgttgcagcagtcacagcttcaatagcatcatccgaaaagcctaatcccaaccaaaagaaccctaccatggcttctgctgcaattgcatc |
51181773 |
T |
|
| Q |
101 |
tgcagcagctctagtagcctctcactgcattgagattgcagaagatatgggagctgaacaggaccaaatcataactgcagttgactctgctattaatgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51181774 |
tgcagcagctctagtagcctctcactgcattgagattgcagaagatatgggagctgaacaggaccaaatcataactgcagttgactctgctattaatgca |
51181873 |
T |
|
| Q |
201 |
aaaaccaatggagatattatgactctaacagccggagcagccacaggtatcagaatctaaagtcgatttattcatctca |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
51181874 |
aaaaccaatggagatattatgactctaacagccggagcagccacaggtatcggaatctaaagtcgatttattcatctca |
51181952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 14180993 - 14180717
Alignment:
| Q |
1 |
ttgctgccgctggtgcagcagtcacagcttcaatagcatcatccgaaaagcctaatcccaaccaaaagaaacctatcatggcttctgctgcaattgcatc |
100 |
Q |
| |
|
|||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
14180993 |
ttgctgccgctgttgcagcagttgcggcttcaatagcatcatccgaaaagcctaatcccaaccaaaagaaccctaccatggcttctgctgcaattgcatc |
14180894 |
T |
|
| Q |
101 |
tgcagcagctctagtagcctctcactgcattgagattgcagaagatatgggagctgaacaggaccaaatcataactgcagttgactctgctattaatgca |
200 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14180893 |
tgccacagctctagtagcctctcattgcattgagattgcagaagatatgggagctgaacaggaccaaatcataacagcagttgactctgctattaatgca |
14180794 |
T |
|
| Q |
201 |
aaaaccaatggagatattatgactctaacagccggagcagccacaggtatcagaatctaaagtcgatttattcatct |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
14180793 |
aaaaccaatggagatattatgactctaacagccggagcagccacaggtatcagaatttaaagttgatttattcatct |
14180717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University