View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19951_high_12 (Length: 510)

Name: NF19951_high_12
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19951_high_12
NF19951_high_12
[»] chr1 (2 HSPs)
chr1 (15-492)||(38342096-38342575)
chr1 (15-492)||(38446289-38446768)
[»] chr5 (7 HSPs)
chr5 (18-262)||(38447031-38447275)
chr5 (27-262)||(38180565-38180800)
chr5 (27-262)||(38190331-38190566)
chr5 (27-262)||(38207789-38208024)
chr5 (27-262)||(38217556-38217791)
chr5 (27-262)||(38455925-38456160)
chr5 (28-262)||(26033457-26033691)
[»] chr4 (1 HSPs)
chr4 (197-305)||(53352034-53352139)
[»] chr6 (1 HSPs)
chr6 (26-112)||(4120486-4120572)


Alignment Details
Target: chr1 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 15 - 492
Target Start/End: Complemental strand, 38342575 - 38342096
Alignment:
Q  15 aatatacctcgagagccatcttagaccatttgaactcaccaaacttagaaaataactcaaagaatttttcttcttcttctttactaaatggaccctttct 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38342575 aatatacctcgagagccatcttagaccatttgaactcaccaaacttagaaaataactcaaagaatttttcttcttcttctttgctaaatggaccctttct 38342476  T
Q  115 taaatcaggtcgtagagtattataccatctaaaacggcaactgtttccacagtgtgcaagtcccgtgttctttgatacctctttccaatttccggttcca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38342475 taaatcaggtcgtagagtattataccatctaaaacggcaactgtttccacagtgtgcaagtcccgtgttctttgatacctctttccaatttccggttcca 38342376  T
Q  215 tgtttttcaacatatgcttttaatatttcatcctcttcttttgaccataatgttcctttcttcaaccttttattagtatcggacgatgaaggcatgatgt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38342375 tgtttttcaacatatgcttttaatatttcatcctcttcttttgaccataatgttcctttcttcaaccttttattagtatcggacgatgaaggcatgatgt 38342276  T
Q  315 tacttgttttactaaacccttaaaactgatgagatactatttcagttttgttatgtgatgtgaatagcgtggtttaagtttat--atatgtataggatta 412  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||    
T  38342275 tacttgttttactaaacccttaaaactgatgagagactatttcagttttgttatgtgatgtgaatagcgcggtttaagtttatatatatgtataggatta 38342176  T
Q  413 acagaatttcagaagatccaggatattagagagtgttttaacctatataaactatataacttatcccattaatatcgcaa 492  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38342175 actgaatttcagaagatccaggatattagagagtgttttaacctatataaactatataacttatcccattaatattgcaa 38342096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 15 - 492
Target Start/End: Complemental strand, 38446768 - 38446289
Alignment:
Q  15 aatatacctcgagagccatcttagaccatttgaactcaccaaacttagaaaataactcaaagaatttttcttcttcttctttactaaatggaccctttct 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38446768 aatatacctcgagagccatcttagaccatttgaactcaccaaacttagaaaataactcaaagaatttttcttcttcttctttgctaaatggaccctttct 38446669  T
Q  115 taaatcaggtcgtagagtattataccatctaaaacggcaactgtttccacagtgtgcaagtcccgtgttctttgatacctctttccaatttccggttcca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38446668 taaatcaggtcgtagagtattataccatctaaaacggcaactgtttccacagtgtgcaagtcccgtgttctttgatacctctttccaatttccggttcca 38446569  T
Q  215 tgtttttcaacatatgcttttaatatttcatcctcttcttttgaccataatgttcctttcttcaaccttttattagtatcggacgatgaaggcatgatgt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38446568 tgtttttcaacatatgcttttaatatttcatcctcttcttttgaccataatgttcctttcttcaaccttttattagtatcggacgatgaaggcatgatgt 38446469  T
Q  315 tacttgttttactaaacccttaaaactgatgagatactatttcagttttgttatgtgatgtgaatagcgtggtttaagtttat--atatgtataggatta 412  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||    
T  38446468 tacttgttttactaaacccttaaaactgatgagagactatttcagttttgttatgtgatgtgaatagcgcggtttaagtttatatatatgtataggatta 38446369  T
Q  413 acagaatttcagaagatccaggatattagagagtgttttaacctatataaactatataacttatcccattaatatcgcaa 492  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38446368 actgaatttcagaagatccaggatattagagagtgttttaacctatataaactatataacttatcccattaatattgcaa 38446289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 2e-66; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 38447275 - 38447031
Alignment:
Q  18 atacctcgagagccatcttagaccatttgaactcaccaaacttagaaaataactcaaagaatttttcttcttcttctttactaaatggaccctttcttaa 117  Q
    |||||||| |||| || ||||||||||||||  ||||||||||   |  ||||| ||||| ||| | |||||||||||||||||||||||||||| |||     
T  38447275 atacctcgcgagcgattttagaccatttgaatccaccaaacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttac 38447176  T
Q  118 atcaggtcgtagagtattataccatctaaaacggcaactgtttccacagtgtgcaagtcccgtgttctttgatacctctttccaatttccggttccatgt 217  Q
    | |||||| |||  |||||||||||||||||||||||||  ||||  ||||||||||||| ||||||||||||||||| | |||||||| ||||||||||    
T  38447175 accaggtcttaggttattataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcgtcccaatttctggttccatgt 38447076  T
Q  218 ttttcaacatatgcttttaatatttcatcctcttcttttgaccat 262  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  38447075 ttttccacatatgcttttaatatttcatcctcttcttttgaccat 38447031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 27 - 262
Target Start/End: Complemental strand, 38180800 - 38180565
Alignment:
Q  27 gagccatcttagaccatttgaactcaccaaacttagaaaataactcaaagaatttttcttcttcttctttactaaatggaccctttcttaaatcaggtcg 126  Q
    |||||| ||||||||||||||| |||||| ||||   | | |||||||| | |||   || |||||||| |||||||||||||||| | | ||| ||| |    
T  38180800 gagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttg 38180701  T
Q  127 tagagtattataccatctaaaacggcaactgtttccacagtgtgcaagtcccgtgttctttgatacctctttccaatttccggttccatgtttttcaaca 226  Q
    |||   |||||||||||| | ||| ||||| || || ||  ||  ||| ||||  || ||||||||||| |||||||||| ||||||||||||||| |||    
T  38180700 taggtgattataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttccatgtttttccaca 38180601  T
Q  227 tatgcttttaatatttcatcctcttcttttgaccat 262  Q
    |||||||||||||||||||| |||||||||||||||    
T  38180600 tatgcttttaatatttcatcttcttcttttgaccat 38180565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 27 - 262
Target Start/End: Original strand, 38190331 - 38190566
Alignment:
Q  27 gagccatcttagaccatttgaactcaccaaacttagaaaataactcaaagaatttttcttcttcttctttactaaatggaccctttcttaaatcaggtcg 126  Q
    |||||| ||||||||||||||| |||||| ||||   | | |||||||| | |||   || |||||||| |||||||||||||||| | | ||| ||| |    
T  38190331 gagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttg 38190430  T
Q  127 tagagtattataccatctaaaacggcaactgtttccacagtgtgcaagtcccgtgttctttgatacctctttccaatttccggttccatgtttttcaaca 226  Q
    |||   |||||||||||| | ||| ||||| || || ||  ||  ||| ||||  || ||||||||||| |||||||||| ||||||||||||||| |||    
T  38190431 taggtgattataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttccatgtttttccaca 38190530  T
Q  227 tatgcttttaatatttcatcctcttcttttgaccat 262  Q
    |||||||||||||||||||| |||||||||||||||    
T  38190531 tatgcttttaatatttcatcttcttcttttgaccat 38190566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 27 - 262
Target Start/End: Complemental strand, 38208024 - 38207789
Alignment:
Q  27 gagccatcttagaccatttgaactcaccaaacttagaaaataactcaaagaatttttcttcttcttctttactaaatggaccctttcttaaatcaggtcg 126  Q
    |||||| ||||||||||||||| |||||| ||||   | | |||||||| | |||   || |||||||| |||||||||||||||| | | ||| ||| |    
T  38208024 gagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttg 38207925  T
Q  127 tagagtattataccatctaaaacggcaactgtttccacagtgtgcaagtcccgtgttctttgatacctctttccaatttccggttccatgtttttcaaca 226  Q
    |||   |||||||||||| | ||| ||||| || || ||  ||  ||| ||||  || ||||||||||| |||||||||| ||||||||||||||| |||    
T  38207924 taggtgattataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttccatgtttttccaca 38207825  T
Q  227 tatgcttttaatatttcatcctcttcttttgaccat 262  Q
    |||||||||||||||||||| |||||||||||||||    
T  38207824 tatgcttttaatatttcatcttcttcttttgaccat 38207789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 27 - 262
Target Start/End: Original strand, 38217556 - 38217791
Alignment:
Q  27 gagccatcttagaccatttgaactcaccaaacttagaaaataactcaaagaatttttcttcttcttctttactaaatggaccctttcttaaatcaggtcg 126  Q
    |||||| ||||||||||||||| |||||| ||||   | | |||||||| | |||   || |||||||| |||||||||||||||| | | ||| ||| |    
T  38217556 gagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttg 38217655  T
Q  127 tagagtattataccatctaaaacggcaactgtttccacagtgtgcaagtcccgtgttctttgatacctctttccaatttccggttccatgtttttcaaca 226  Q
    |||   |||||||||||| | ||| ||||| || || ||  ||  ||| ||||  || ||||||||||| |||||||||| ||||||||||||||| |||    
T  38217656 taggtgattataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttccatgtttttccaca 38217755  T
Q  227 tatgcttttaatatttcatcctcttcttttgaccat 262  Q
    |||||||||||||||||||| |||||||||||||||    
T  38217756 tatgcttttaatatttcatcttcttcttttgaccat 38217791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 27 - 262
Target Start/End: Complemental strand, 38456160 - 38455925
Alignment:
Q  27 gagccatcttagaccatttgaactcaccaaacttagaaaataactcaaagaatttttcttcttcttctttactaaatggaccctttcttaaatcaggtcg 126  Q
    |||||| ||||||||||||||| |||||| ||||   | | |||||||| | |||   || |||||||| |||||||||||||||| | | ||| ||| |    
T  38456160 gagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttg 38456061  T
Q  127 tagagtattataccatctaaaacggcaactgtttccacagtgtgcaagtcccgtgttctttgatacctctttccaatttccggttccatgtttttcaaca 226  Q
    |||   |||||||||||| | ||| ||||| || || ||  ||  ||| ||||  || ||||||||||| |||||||||| ||||||||||||||| |||    
T  38456060 taggtgattataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttccatgtttttccaca 38455961  T
Q  227 tatgcttttaatatttcatcctcttcttttgaccat 262  Q
    |||||||||||||||||||| |||||||||||||||    
T  38455960 tatgcttttaatatttcatcttcttcttttgaccat 38455925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 28 - 262
Target Start/End: Original strand, 26033457 - 26033691
Alignment:
Q  28 agccatcttagaccatttgaactcaccaaacttagaaaataactcaaagaatttttcttcttcttctttactaaatggaccctttcttaaatcaggtcgt 127  Q
    ||||| ||||||||||||||| |||||| ||||   | | ||| |||| | ||||  ||||||||||| |||||||||||||||| | | ||| ||| |     
T  26033457 agccagcttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgc 26033556  T
Q  128 agagtattataccatctaaaacggcaactgtttccacagtgtgcaagtcccgtgttctttgatacctctttccaatttccggttccatgtttttcaacat 227  Q
    ||   |||||||||||| | ||| ||||| || || ||  ||  ||| || |  || || |||||||| |||||||||| ||||||||| ||||| ||||    
T  26033557 aggtgattataccatcttagacgacaacttttaccgcaacgtataagcccggcatttttcgatacctcgttccaatttctggttccatggttttccacat 26033656  T
Q  228 atgcttttaatatttcatcctcttcttttgaccat 262  Q
    ||||||||||||||||||| |||||||||||||||    
T  26033657 atgcttttaatatttcatcttcttcttttgaccat 26033691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 197 - 305
Target Start/End: Original strand, 53352034 - 53352139
Alignment:
Q  197 ttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccataatgttcctttcttcaaccttttattagtatcgg 296  Q
    |||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||   || ||||||| ||||||| ||| |||||||| |    
T  53352034 ttccaatttctggttccatgtttttccacatatgcttttaacatttcatcctcttcttttgacc---attttccttttttcaaccctttgttagtatccg 53352130  T
Q  297 acgatgaag 305  Q
    | |||||||    
T  53352131 atgatgaag 53352139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 4120572 - 4120486
Alignment:
Q  26 agagccatcttagaccatttgaactcaccaaacttagaaaataactcaaagaatttttcttcttcttctttactaaatggacccttt 112  Q
    |||||||| |||  |||||||||  |||||| ||||| |  |||||||||||||  || ||||||||||||||| ||||| ||||||    
T  4120572 agagccattttactccatttgaatccaccaagcttagcatgtaactcaaagaataatttttcttcttctttactgaatgggcccttt 4120486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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