View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_high_14 (Length: 498)
Name: NF19951_high_14
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 199 - 431
Target Start/End: Complemental strand, 34361423 - 34361192
Alignment:
| Q |
199 |
gaacacaaagcaagcatgcatgagtagttttatggagtaagttttgtattaaaaaccattggatgcatgtgtctgggtgtcggataggtgtgaacataat |
298 |
Q |
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| T |
34361423 |
gaacacaaagcaagcatgcattagtagttttatggagtaagttttgtattaaaaaccattggatgcatgtgtctgggtgtcggataggtgtgaacataat |
34361324 |
T |
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| Q |
299 |
aaactttgattttgggacttttattgtttttgttgttgtag-tttgcttctctggatcaatggcagttgtgaaggtataaggagtaacacaggcacctga |
397 |
Q |
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| T |
34361323 |
aaactttgattttgggacttttattgtttttgttgttgtagttttgcttatctggatcaatggcagttgtgaaggtataaggagtaacacaggcacctga |
34361224 |
T |
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| Q |
398 |
tggtaaacatgatgagacagagtctggtcaacaa |
431 |
Q |
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| T |
34361223 |
tggtaaacatgatgaaac--agtctggtcaacaa |
34361192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 34361551 - 34361418
Alignment:
| Q |
18 |
cgttttagatagaagctaatccatctaaacatgacttaaacaccaaacagaaagaagaaaccaaagcaatgacattggtttgtagagacactaaaattac |
117 |
Q |
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| T |
34361551 |
cgtttcagatagaagctaatccatctaaacatgacttaaacaccaaaccaaaagaagaaaccaaagcaatgacattggtttgtagagacactaaaattac |
34361452 |
T |
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| Q |
118 |
tctttcatcaatatgaacagccattagagaacac |
151 |
Q |
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| T |
34361451 |
tctttcatcaatatgaacagccattagagaacac |
34361418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 344 - 419
Target Start/End: Complemental strand, 37167052 - 37166977
Alignment:
| Q |
344 |
cttctctggatcaatggcagttgtgaaggtataaggagtaacacaggcacctgatggtaaacatgatgagacagag |
419 |
Q |
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| T |
37167052 |
cttctctagatcaatggcagttgtgatggtataaggaggaacacaggcacgtgatggtaaatataatgagacagag |
37166977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 344 - 419
Target Start/End: Original strand, 12118356 - 12118431
Alignment:
| Q |
344 |
cttctctggatcaatggcagttgtgaaggtataaggagtaacacaggcacctgatggtaaacatgatgagacagag |
419 |
Q |
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| T |
12118356 |
cttctctagatcaatggcagttgtgatggtataaggaggaacacaggcacgtgatggtaaatataatgaaacagag |
12118431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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