View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_high_22 (Length: 406)
Name: NF19951_high_22
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 5 - 390
Target Start/End: Original strand, 40215296 - 40215683
Alignment:
| Q |
5 |
taattctgggctgaaaaataagatggcattttgtaaccaaaaaagtttccaaaattggaaaccattcatagcagtagtgctcttgcaatttggatatgct |
104 |
Q |
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| T |
40215296 |
taattttgggctgaaaaataatatggcattttgtaaccaaaaaagtttccaaaattggaaaccattcatagcagtagtgctcttgcaatttggatatgct |
40215395 |
T |
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| Q |
105 |
ggtatggatattctgtccaagtctgcactgaacaaaggaatgagctgttatgtactagtcgtttatcgccacgccgttgccttcgttgtcatcgttcctt |
204 |
Q |
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| T |
40215396 |
ggtatggatattctgtccaagtctgcactgaacaaaggaatgagctgttatgtactagtcgtttatcgccacgccgttgccttcgttgtcatcgttcctt |
40215495 |
T |
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| Q |
205 |
ttgcggtgatcttagaaaagtattgtttactttc-tccacttgtttgtatatacatgaaattgaattgaagtaattgatatgctaca-nnnnnnnnaaca |
302 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
40215496 |
ttgcagtgatcttagaaaagtattgtttactttcttccacttgtttgtatatacatgaatttgaattgaagtaattgatatgctacatttttttttaaca |
40215595 |
T |
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| Q |
303 |
ggaaagtaagaccaaagatgacattgtcaatctttttgaagctagtggctctcagtgtgctagagtaattctctgcatggttaaacat |
390 |
Q |
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| T |
40215596 |
ggaaagtaagaccaaagatgacattgtcaatctttttgaagctagtggctctcagtgtgctagagtaattctctgcatggttaaacat |
40215683 |
T |
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